Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0016
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.0  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 393 PKALL*RTCWEARPSMAKEMEKF 461
           P+AL   T W+ RPS  +E E+F
Sbjct: 577 PRALW-PTEWKVRPSTVEEREEF 598


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 116 KDEECTKSLINNALNEISSTGIPELDIPPVDPIALKNVSVTVLGL 250
           +D +  K +++N L    ST   +  +PPV      NVSV +L L
Sbjct: 56  EDGKSDKEILDNLL---LSTRYDKRLLPPVQGTLTVNVSVLLLSL 97


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 116 KDEECTKSLINNALNEISSTGIPELDIPPVDPIALKNVSVTVLGL 250
           +D +  K +++N L    ST   +  +PPV      NVSV +L L
Sbjct: 56  EDGKSDKEILDNLL---LSTRYDKRLLPPVQGTLTVNVSVLLLSL 97


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 116 KDEECTKSLINNALNEISSTGIPELDIPPVDPIALKNVSVTVLGL 250
           +D +  K +++N L    ST   +  +PPV      NVSV +L L
Sbjct: 56  EDGKSDKEILDNLL---LSTRYDKRLLPPVQGTLTVNVSVLLLSL 97


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 380 YKVFSESPLIKNLLGGTT 433
           Y + + +PL+K L GG +
Sbjct: 115 YNITNSTPLLKKLYGGNS 132


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 259 YVHQSKNSHGNIFQSNG 209
           Y  Q  N  GNI Q NG
Sbjct: 353 YTKQGLNVLGNIVQGNG 369


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 259 YVHQSKNSHGNIFQSNG 209
           Y  Q  N  GNI Q NG
Sbjct: 353 YTKQGLNVLGNIVQGNG 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,601
Number of Sequences: 438
Number of extensions: 3263
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)