Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0015
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    27   1.6  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    27   2.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   4.9  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   8.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   8.5  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   8.5  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.5  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   8.5  

>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 362 NAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQPIQAEP 523
           N Q +PQP   Q +        P AP +S +N +  +N  IPN +   P QA+P
Sbjct: 732 NQQQQPQPQSQQQQQAS---QFPQAPSVS-SNVRP-INGSIPNAQPSVPGQAQP 780


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 353 PDPNAQWRPQPFKSQP 400
           PDPNA  RP   +SQP
Sbjct: 169 PDPNAMQRPHDLESQP 184


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 430 NCSSSIFNQC--SKIRQLLHTKPTNSSANTGRTHPKLFHTSPILKFSKPT 573
           N  +S+F+    S++   LH K  NSS++T    P+L  TS    F+KPT
Sbjct: 2   NSEASVFSNMDWSQLAHSLHKKANNSSSSTTGAFPQL--TS----FTKPT 45


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 477 PTYQTDEQFSQYRQNPPKTI 536
           P Y+ +E F  ++QNPP  +
Sbjct: 157 PFYEHEEDFINFKQNPPSGV 176


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 517 RTHPKLFHTSPILKFSKPT 573
           + + KL H++P  K SKPT
Sbjct: 79  KQNEKLLHSNPTFKISKPT 97


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 353 PDPNAQW-RPQPFKSQPRYTHIVYNVPTAPPLS 448
           P P  Q  RP P    P   + V NVPT P +S
Sbjct: 347 PTPQVQGSRPPPPPPMPAPIYNVPNVPTVPTVS 379


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 359 PNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTN 457
           PN   +P      P   + +YN   APP SL N
Sbjct: 251 PNPVMQPSLVPQMPYPQNGMYNPSVAPPASLVN 283


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 446 SLTNAQKFVNSYIPNRRTVQPIQAEPT 526
           + TN+QK+  + +PN  T QP+ A+P+
Sbjct: 124 NFTNSQKYFANDLPNSLTDQPL-AQPS 149


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 440 EEQLERCIRYACIEVEI*RAGVSIERW 360
           EE   RCI YAC  +E       I  W
Sbjct: 889 EELYSRCIDYACHNIEFFLEANRISEW 915


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,110
Number of Sequences: 5004
Number of extensions: 48026
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)