Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0015
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                31   0.54 
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)                      29   2.9  
SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9)                  29   3.8  
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)                28   6.7  
SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)             27   8.8  

>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 412

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +2

Query: 353 PDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQPIQAEPTQN 532
           P P   ++P PF       H++Y  PTAPP ++  A+    + +   R   P +A     
Sbjct: 179 PPPLNPYQPPPFPPP----HLMYPQPTAPPAAIPRAK----AKVQTPRKGAPQRATARNG 230

Query: 533 YFTPAQFLSSQSLPGVG 583
           Y  P  F S    P +G
Sbjct: 231 YGAPMGFGSPIQQPMIG 247


>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +1

Query: 433 CSSSIFNQCSKIR--QLLHTKPT--NSSANTGRTHPKLFHTSPILKFSKP 570
           CS+++   CS +    L HT+PT  ++    G T P L HT P+L  ++P
Sbjct: 49  CSATLA-PCSALTCPMLGHTRPTLGHTRPTLGHTRPTLGHTRPMLGHTRP 97



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 481 HTKPT--NSSANTGRTHPKLFHTSPILKFSKP 570
           HT+PT  ++    G T P L HT P+L  + P
Sbjct: 73  HTRPTLGHTRPTLGHTRPMLGHTRPMLGHTHP 104


>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
          Length = 841

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 442 SIFNQCSKIRQLLHTKPTNSSANTGRT-HPKLFHTSPILK 558
           ++  Q  KI Q LH      +   G   H KLFH  P++K
Sbjct: 559 NVKEQVRKINQYLHFNDAEKAKPRGHEEHDKLFHVRPLIK 598


>SB_43915| Best HMM Match : Bombesin (HMM E-Value=4.9)
          Length = 485

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 451 NQCSKIRQLLHTKPTNSSANTGRT-HPKLFHTSPILK 558
           N+  KI Q LH      +   G   H KLFH  P++K
Sbjct: 362 NKYVKINQYLHFNDAEKAKPRGHEEHDKLFHVRPLIK 398


>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
          Length = 1202

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 356  DPNAQWRPQPFKSQPRYTHIVYNVPTAPPL--SLTNAQKFVNSYIPNRRTVQPIQAEP 523
            DPN+QW+P   K +P+      N P +  L  S  ++   +N+  P+     P   +P
Sbjct: 984  DPNSQWKPVTVKQEPK-DEDCQNPPVSKKLRPSPPDSLPIMNAGTPSSGHFSPHSGQP 1040


>SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 520 FCLYWLNCSSVWYVGVDEFLSIG*R*RRSSWNVVYDMRVSRLRFEGL-GSPLSVGV 356
           FC Y+L   SVW  G ++   +G    RS   + + ++VS   FEG  G  ++VG+
Sbjct: 289 FCFYFLADGSVWSWGDNKKGQLGCSRERSKKCIPFPVQVS---FEGCRGKSIAVGL 341


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +1

Query: 427 SNCSSSIF-NQCSKIRQLLHTKPTNS--SANTGRTHPKLFHTSPILKFSKPTRCWSEI 591
           S+ +SSIF NQ S    L  +  T +  +AN  R  P     +  LK SKP++ WS +
Sbjct: 151 SSRNSSIFANQRSPRATLCASDITETQLTANGKRLEPSSTRLNEPLKDSKPSQLWSNV 208


>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
          Length = 282

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 350 APDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRT-VQPIQAEPT 526
           +P P+ Q R  PFKS PR +    +     PL  + A  F++S  P+ R    P ++ P 
Sbjct: 134 SPQPSLQVRSPPFKSTPRPSSPQPSFQVRSPLFKSAA--FLSSPQPSLRVRTPPFKSAPL 191

Query: 527 QNYFTPAQFLSSQSLP 574
             + +P   L  +S P
Sbjct: 192 --FSSPQPSLQVRSPP 205


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,674,167
Number of Sequences: 59808
Number of extensions: 370131
Number of successful extensions: 1022
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)