Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0015
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.0  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.0  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 439 RSSWNVVYDMRVSRLRFEGLGSPLSVGVW 353
           RSS +V   M  + + F GL S L++G W
Sbjct: 305 RSSQSVAEVMDRNGVLFFGLLSDLAIGCW 333


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 535 IVLGGFCLYWLNCSSVWYV 479
           I++GGF L WL   +++ V
Sbjct: 13  IIVGGFILCWLPFFTMYLV 31


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 32  VCASDLLCSRKRPSEFDYRNFDVTCERNKGL 124
           VC    L    +  E ++  FD+ CE ++GL
Sbjct: 91  VCGIYFLAEPDQKIEINFITFDIPCE-HRGL 120


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 535 IVLGGFCLYWLNCSSVWYV 479
           I++GGF L WL   +++ V
Sbjct: 461 IIVGGFILCWLPFFTMYLV 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,527
Number of Sequences: 438
Number of extensions: 3463
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)