Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0014
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    28   0.86 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.1  

>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 565 SSQSATRFSSYSGASVKTTVDLYISIGNSNFNNHTLSR 452
           +S+S+T  S+ S     T+  + + + N   NNHTLSR
Sbjct: 350 ASESSTSQSNDSQGPANTSYPVSVPLPNDAENNHTLSR 387


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 238 SNVPTNFCYIFKLNCISYYRKKWTRHLNNYLFNFFQHRNVIII 110
           SNV   FC+ F  +  S++   +T    N+ F   +H++++ I
Sbjct: 102 SNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLLDI 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,218
Number of Sequences: 5004
Number of extensions: 38446
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)