Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0014
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine re...    28   4.2  
AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine r...    28   4.2  
AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF125952-5|AAD14697.2|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 61 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 2   VAGTRLQIKLKVILYLPNSLLFFYNSIYYSNK*SVHDYN 118
           V G  LQ+ L +I Y+P S+LF +N  Y   +  +  Y+
Sbjct: 236 VKGLNLQVLLPLICYVPISILFCWNK-YSGQQIEISQYS 273


>AC006722-11|AAW88389.1|  327|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 75 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 2   VAGTRLQIKLKVILYLPNSLLFFYNSIYYSNK*SVHDYN 118
           V G  LQ+ L +I Y+P S+LF +N  Y   +  +  Y+
Sbjct: 236 VKGLNLQVLLPLICYVPISILFCWNK-YSGQQIEISQYS 273


>AL032639-9|CAA21633.1|  303|Caenorhabditis elegans Hypothetical
           protein Y38F1A.8 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 231 TLDIWKIYKKHYIMCLFVKVPPKNHFL 311
           ++ IW+  K  ++M +F+ VPP+  FL
Sbjct: 95  SIGIWQPQKYIWMMIMFIHVPPRLFFL 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,240,908
Number of Sequences: 27780
Number of extensions: 205857
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)