Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0013
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    29   0.60 
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    28   1.0  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   4.2  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   7.4  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   9.7  

>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 346 IPLLHA*NEVPIKLLNFQKLDRFPPFIYQDYYNYHALKDRV 468
           +PL +   E+   L++ Q+L R+PPF  QD+ +    + RV
Sbjct: 63  VPLAN--KELSRSLIHVQELSRYPPFYNQDHQHLGVPRSRV 101


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 250 PIYCLFNYRCINNY 291
           PIYCLF Y  ++NY
Sbjct: 491 PIYCLFEYSAVDNY 504


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 250 PIYCLFNYRCINNY 291
           P YCLF Y  ++NY
Sbjct: 472 PFYCLFEYSSVDNY 485


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 163 LLMKSMKYRISNTYAFKKCINMRHFNP 83
           LL+   +  + NTY FK+  ++R+  P
Sbjct: 445 LLLNDYEENLKNTYVFKELYSVRNIRP 471


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 520 NSHLKLKYFANCRTRLLKDG*FYCHMYXXXXXXXLKTKNRFTKS 651
           N   +L  +A   TR      F  H++       +K KNRFT++
Sbjct: 106 NHEEQLAAYAKYWTRFTTSARFINHLFGYLNRYWVKLKNRFTET 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,251
Number of Sequences: 5004
Number of extensions: 47075
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)