Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0010
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   1.1  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    25   3.2  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    24   4.3  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   5.6  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    24   5.6  
SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|...    24   5.6  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    24   5.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    23   9.9  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -3

Query: 182  NMTLPLEELVSLYHLRITSSERTLVLYSITTSLL 81
            N+ L ++EL++L   +ITS  ++L + S+  SL+
Sbjct: 957  NIALVVDELINLSSKQITSHPQSLSIASLEASLI 990


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +1

Query: 1   AGTRAELALLTKVQEYCYENMSFMRAFSKLVVMLYKTSVLSEEVILKWYKDTSSSKGKVM 180
           +G+      + K ++  YE   ++RA  +   +  +   L EE+  +W +D +   G + 
Sbjct: 200 SGSHVNRIYVPKAEQEMYEY--YVRAAKERPYLNLQVEYLPEEITPEWVRDVNDKPGLLA 257

Query: 181 FLDQMKKFVD 210
               M+K+ D
Sbjct: 258 L--AMEKYQD 265


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 174 LALGRTSVFVPLEDHLLREDARLVQHYHQLTERAHEAHVLVAVLLDLSEQGEL 16
           + L RT   V +++   R     +Q Y ++    +   +L  +LLDL EQG L
Sbjct: 278 VVLPRTKYDVAIDEESPRPG---LQTYEKMIAGCYLGDILRRILLDLYEQGAL 327


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -2

Query: 261 LIFFFSALRLLFSIL-EPVYKLLHLVKEHDLALGRTSVFVPLEDHLLREDARLVQHYHQL 85
           LIF    L  L  I  E  YK+L L       LG+ S+F   +  + ++   ++ +  +L
Sbjct: 121 LIFDSMGLSPLIHISGEDKYKVLCLFSIWRRKLGKCSIFTVHDPDIQKKIKSILSYLWEL 180

Query: 84  TERAHEAHVLV 52
           +      HV+V
Sbjct: 181 SNTNDPPHVIV 191


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 118 LSEEVILKWYKDTSSSKGKVMFLDQMKKFVDWLQN 222
           LSEEV  ++YK+   SK K  F    KK+ +  Q+
Sbjct: 110 LSEEVKRRFYKNWFKSKKKA-FTKYAKKYAESTQS 143


>SPBC21C3.19 |||DUF1960 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 106

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 191 WSRNMTLPLEELVSLYHLRITSSER 117
           W ++ T+PL E+V  + +  TS+ +
Sbjct: 33  WRKDKTVPLTEIVDSFQVFTTSNNK 57


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 118 LSEEVILKWYKDTSSSKGKVMFLDQMKKFVDWLQN 222
           LSEEV  ++YK+   SK K  F    KK+ +  Q+
Sbjct: 110 LSEEVKRRFYKNWFKSKKKA-FTKYAKKYAESTQS 143


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 159 TSVFVPLEDHLLREDARLVQHYHQLTER 76
           TSV+  ++DH  R+      HY  +  R
Sbjct: 824 TSVYHDVQDHCYRKPQSYEDHYQDIRTR 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 985,291
Number of Sequences: 5004
Number of extensions: 15871
Number of successful extensions: 57
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)