Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0009
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0789 - 5919271-5919411,5920105-5920215,5920303-5920401,592... 151 4e-37
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 115 2e-26
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559... 44 6e-05
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003... 43 1e-04
10_08_0965 + 21915842-21916906 30 0.85
12_02_1080 - 25911521-25911922 29 1.5
10_07_0170 - 13777590-13777973,13778073-13778339 28 4.5
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085... 28 4.5
07_01_0817 + 6533316-6533849,6533996-6534064,6534528-6534767,653... 28 4.5
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 28 4.5
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 27 6.0
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 27 7.9
02_01_0642 - 4803464-4805665,4806231-4806320 27 7.9
>02_01_0789 -
5919271-5919411,5920105-5920215,5920303-5920401,
5920486-5920642,5920774-5920937,5921017-5921079,
5921153-5921377,5922038-5922135,5923283-5923499
Length = 424
Score = 151 bits (365), Expect = 4e-37
Identities = 71/115 (61%), Positives = 88/115 (76%)
Frame = +2
Query: 134 GEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEV 313
GEG R YY+ I +LQL + +K+ NL RL+AQRN+LN++VRMLR GSYVGEV
Sbjct: 34 GEGLRQYYLQHIHDLQLQIRQKTHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEV 93
Query: 314 VKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 478
VK M K KVLVKVHPEGK+VVD+DK++DI +T + RVALRN+SY LH ILP+KV
Sbjct: 94 VKVMGKSKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYMLHLILPSKV 148
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 115 bits (276), Expect = 2e-26
Identities = 66/139 (47%), Positives = 86/139 (61%), Gaps = 23/139 (16%)
Frame = +2
Query: 131 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 310
+G+G RPYY ++I +LQL + + + NL RL+AQRN LN++V L GSYVGE
Sbjct: 32 RGDGLRPYYQSRIHDLQLQIRQGTDNLSRLEAQRNVLNSQVITLGEELKVLHEPGSYVGE 91
Query: 311 VVKPMDKKKVLVK-----------------------VHPEGKFVVDLDKNVDINDVTANC 421
VVK M K KVLVK VHPEGK+VVD+DK++DI ++ +
Sbjct: 92 VVKVMGKSKVLVKCCVLVFVHMSVALEIIGEDNILLVHPEGKYVVDVDKSIDITKLSPST 151
Query: 422 RVALRNESYTLHKILPNKV 478
RVALRN+SY LH ILP+KV
Sbjct: 152 RVALRNDSYMLHLILPSKV 170
>02_01_0754 -
5595813-5595887,5595973-5596071,5596136-5596327,
5596992-5597129,5597415-5597501,5597583-5597669,
5597795-5597956,5598089-5598225,5598483-5598602,
5600668-5600773
Length = 400
Score = 44.0 bits (99), Expect = 6e-05
Identities = 20/62 (32%), Positives = 35/62 (56%)
Frame = +2
Query: 293 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 472
G +GEV++P+D ++ +VK ++VV VD +T+ RV L + T+ + LP
Sbjct: 61 GQIIGEVLRPLDNERFIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRTLPR 120
Query: 473 KV 478
+V
Sbjct: 121 EV 122
>06_03_0711 +
23798998-23799106,23799838-23799957,23800181-23800317,
23800418-23800579,23800707-23800793,23800872-23800958,
23801317-23801454,23802023-23802214,23802287-23802385,
23802490-23802564
Length = 401
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +2
Query: 293 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 472
G +GEV++P+D ++ +VK ++VV VD + A RV L + T+ + LP
Sbjct: 62 GQIIGEVLRPLDSERFIVKASSGPRYVVGCRSKVDKEKLIAGTRVVLDMTTLTIMRTLPR 121
Query: 473 KV 478
+V
Sbjct: 122 EV 123
>10_08_0965 + 21915842-21916906
Length = 354
Score = 30.3 bits (65), Expect = 0.85
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = +3
Query: 270 SFSSCKNRDRTSEKWLNQWIKRRSS*KFILKVNSSSI 380
SFSS ++++R S +W ++W R SS ++ + ++ ++
Sbjct: 275 SFSSARSQERWSNRWSSRWSSRWSSGRWSSRYDAGTV 311
>12_02_1080 - 25911521-25911922
Length = 133
Score = 29.5 bits (63), Expect = 1.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 167 SWLCSTGENPHPSPCPLPF 111
+W+CS GE+P P P+P+
Sbjct: 18 TWICSGGESPRPLLIPVPY 36
>10_07_0170 - 13777590-13777973,13778073-13778339
Length = 216
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1
Query: 1 GGGHEGCFVLY 33
GGGHEGCFV++
Sbjct: 142 GGGHEGCFVVW 152
>09_02_0524 -
10207711-10208154,10208237-10208338,10208439-10208531,
10208612-10208683,10208730-10208798,10208928-10209175,
10209256-10209370
Length = 380
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 167 IEELQLIVAEKSQNLRRLQAQRNELNAKVR 256
+EE+Q + E Q LQ+QR ELN++ R
Sbjct: 309 LEEVQKLTVENLQLKGELQSQREELNSQKR 338
>07_01_0817 +
6533316-6533849,6533996-6534064,6534528-6534767,
6537747-6537965,6538041-6538133,6538231-6538332,
6538415-6538858
Length = 566
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 167 IEELQLIVAEKSQNLRRLQAQRNELNAKVR 256
+EE+Q + E Q LQ+QR ELN++ R
Sbjct: 495 LEEVQKLTVENLQLKGELQSQREELNSQKR 524
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 167 IEELQLIVAEKSQNLRRLQAQRNELNAKVR 256
+EE+Q + E Q LQ+QR ELN++ R
Sbjct: 366 LEEVQKLTVENLQLKGELQSQREELNSQKR 395
>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +3
Query: 207 IFVVFKPSV-----MNSTLKFVCYARSFSSCKNRDRTSEKWLNQWIKRRSS 344
+F +FKP++ +N L + Y+RSFS RD EK +++ SS
Sbjct: 868 VFNLFKPTISYRSDINIELWNLSYSRSFSGFNKRDLEREKAARAELEKTSS 918
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 225 PSVMNSTLKFVCYARSFSSC 284
P +N TL F YAR SSC
Sbjct: 38 PVALNKTLAFCAYARGSSSC 57
>02_01_0642 - 4803464-4805665,4806231-4806320
Length = 763
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 161 TKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLR 265
+K+E +Q+ V EK L Q + E+N++V L+
Sbjct: 474 SKVESIQIAVQEKDSELSETQRRLAEVNSEVVELK 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,162,065
Number of Sequences: 37544
Number of extensions: 200080
Number of successful extensions: 482
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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