Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0009
(480 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 3e-27
SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4) 116 1e-26
SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_30757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19) 27 6.1
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19) 27 6.1
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 27 8.0
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036) 27 8.0
SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29) 27 8.0
SB_18313| Best HMM Match : Trans_reg_C (HMM E-Value=0.91) 27 8.0
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 118 bits (283), Expect = 3e-27
Identities = 56/78 (71%), Positives = 65/78 (83%)
Frame = +2
Query: 176 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 355
++L+V EK +NLRRL+AQRNELNAKVRMLR GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82 VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141
Query: 356 PEGKFVVDLDKNVDINDV 409
PEGKFVVD+DK +D+ +V
Sbjct: 142 PEGKFVVDIDKGIDMAEV 159
>SB_3774| Best HMM Match : DivIC (HMM E-Value=4.4)
Length = 158
Score = 116 bits (279), Expect = 1e-26
Identities = 55/75 (73%), Positives = 63/75 (84%)
Frame = +2
Query: 176 LQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVKVH 355
++L+V EK +NLRRL+AQRNELNAKVRMLR GSYVGEVVKPMDKKKVLVKVH
Sbjct: 82 VKLVVTEKIKNLRRLEAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVH 141
Query: 356 PEGKFVVDLDKNVDI 400
PEGKFVVD+DK +D+
Sbjct: 142 PEGKFVVDIDKGIDM 156
>SB_833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 74 HESQ*RNMTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQ 223
HE+Q R + LT E KG+ F KI+ELQ V + +Q ++ L+
Sbjct: 123 HEAQRREVVLTKDYERAVEKGDNF----YAKIDELQEKVDDTTQKIKLLE 168
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 166 LGYVVRAKTLTLHRVHFHFSRESHI 92
LG + RA+T+ LHR SRE H+
Sbjct: 118 LGELERAQTVLLHRASSRHSREEHV 142
>SB_30757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 406 CHGQLSCRSSQRKLYLTQNTTQQSR 480
CH LSC SQR L Q Q+SR
Sbjct: 114 CHVGLSCLKSQRTLRALQKALQRSR 138
>SB_33932| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
Length = 541
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 395 DINDVTANCRVALRNESYTLHKILPN 472
DI ++ C+VA E +TL + LPN
Sbjct: 154 DIRPISLTCQVAKLMEGFTLSRALPN 179
>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 395 DINDVTANCRVALRNESYTLHKILPN 472
DI ++ C+VA E +TL + LPN
Sbjct: 525 DIRPISLTCQVAKLMEGFTLSRALPN 550
>SB_2234| Best HMM Match : RVT_1 (HMM E-Value=1.3e-19)
Length = 476
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 395 DINDVTANCRVALRNESYTLHKILPN 472
DI ++ C+VA E +TL + LPN
Sbjct: 89 DIRPISLTCQVAKLMEGFTLSRALPN 114
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 74 HESQ*RNMTLTTKMEVDTVKGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKV 253
HE Q R+++ +EV V ++ +EE L V N+ R Q+ N +N V
Sbjct: 184 HERQRRSVSTERNVEVLVVADRTMHEFHGAALEEYLLTVMNMVNNIYRDQSIGNAINIVV 243
>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
Length = 1014
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 131 KGEGFRPYYITKIEELQLIVAEKSQ 205
KG+G +P + +EE ++I ++KSQ
Sbjct: 494 KGKGHKPLPLVPVEEFEVISSKKSQ 518
>SB_41460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1669
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 395 DINDVTANCRVALRNESYTLHKILP 469
DI + C+VA E +TL++ILP
Sbjct: 1274 DIRPIALTCQVAKVMEGFTLNRILP 1298
>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
Length = 551
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 164 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLR 265
K+EE + + A+K ++ + LQ + NELN ++ L+
Sbjct: 22 KLEESKNLYAKKLESEKELQDKINELNTEISSLQ 55
>SB_18313| Best HMM Match : Trans_reg_C (HMM E-Value=0.91)
Length = 567
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 350 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILP 469
VHP K DI ++ C +A E +TL + LP
Sbjct: 371 VHPLPKLSPPKSIETDIRPISLTCHLAKAMEGFTLSRSLP 410
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,096
Number of Sequences: 59808
Number of extensions: 240546
Number of successful extensions: 531
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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