Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0009
         (480 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta...   150   4e-37
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)    149   1e-36
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun...    47   6e-06
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4...    47   8e-06
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof...    28   3.7  
At3g29185.2 68416.m03659 expressed protein                             27   5.0  
At3g29185.1 68416.m03658 expressed protein                             27   5.0  
At3g24880.1 68416.m03120 expressed protein                             27   6.5  
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu...    27   8.7  

>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
           putative almost identical to 26S proteasome AAA-ATPase
           subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
           almost identical to a member of conserved Sug1 CAD
           family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
          Length = 419

 Score =  150 bits (364), Expect = 4e-37
 Identities = 71/116 (61%), Positives = 88/116 (75%)
 Frame = +2

Query: 131 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 310
           +GEG   YY+  ++ELQ +  EKS NL RL+AQRNELN++VRMLR         GSYVGE
Sbjct: 28  QGEGLNKYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87

Query: 311 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 478
           VVK M K KVLVKVHPEGK+VVD+DK++DI  +T + RVALRN+SY LH +LP+KV
Sbjct: 88  VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKV 143


>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
          Length = 419

 Score =  149 bits (361), Expect = 1e-36
 Identities = 70/116 (60%), Positives = 88/116 (75%)
 Frame = +2

Query: 131 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGE 310
           +GEG + YY+  I ELQ  + +K+ NL RL+AQRNELN++VRMLR         GSYVGE
Sbjct: 28  QGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 87

Query: 311 VVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 478
           VVK M K KVLVKVHPEGK+VVD+DK++DI  +T + RVALRN+SY LH +LP+KV
Sbjct: 88  VVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKV 143


>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
           p42D, putative similar to 26S proteasome regulatory
           complex subunit p42D [Drosophila melanogaster]
           gi|6434958|gb|AAF08391
          Length = 399

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 28/103 (27%), Positives = 53/103 (51%)
 Frame = +2

Query: 170 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 349
           +EL+  V    +NLR  + + N+    ++ L+         G  +GEV++P+D ++++VK
Sbjct: 26  KELESRVRTARENLRAAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78

Query: 350 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 478
                ++VV     VD   +T+  RV L   + T+ + LP +V
Sbjct: 79  ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREV 121


>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
           gb|AAF22524.1
          Length = 399

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 28/103 (27%), Positives = 53/103 (51%)
 Frame = +2

Query: 170 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVLVK 349
           +EL+  V    +NLR  + + N+    ++ L+         G  +GEV++P+D ++++VK
Sbjct: 26  KELESRVRTARENLRGAKKEFNKTEDDLKSLQSV-------GQIIGEVLRPLDNERLIVK 78

Query: 350 VHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 478
                ++VV     VD   +T+  RV L   + T+ + LP +V
Sbjct: 79  ASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREV 121


>At4g38870.1 68417.m05504 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 426

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 24/98 (24%), Positives = 46/98 (46%)
 Frame = +3

Query: 180 SSLSPKNLKIFVVFKPSVMNSTLKFVCYARSFSSCKNRDRTSEKWLNQWIKRRSS*KFIL 359
           S L P +L I  + K   +   ++F+C ++ ++S        + +LN+ +KR  S  F+ 
Sbjct: 50  SELLPVDL-IMEILKKLSLKPLIRFLCVSKLWASIIRDPYFMKLFLNESLKRPKSLVFVF 108

Query: 360 KVNSSSI*TRTLILTMSRPIVVSLFATKAIPYTKYYPT 473
           +  S      ++ L  +R I  S  ++ A   T Y+ T
Sbjct: 109 RAQSLGSIFSSVHLKSTREISSSSSSSSASSIT-YHVT 145


>At3g29185.2 68416.m03659 expressed protein
          Length = 411

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 293 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 382
           G  V ++    D+KKV   VH EGK   DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362


>At3g29185.1 68416.m03658 expressed protein
          Length = 433

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 293 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDL 382
           G  V ++    D+KKV   VH EGK   DL
Sbjct: 333 GQVVQDISSTSDEKKVTTNVHWEGKMSKDL 362


>At3g24880.1 68416.m03120 expressed protein
          Length = 1957

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 234  MNSTLKFVCYARSFSSCKNRDR 299
            MNSTLK  C  R+ + CK+R +
Sbjct: 1079 MNSTLKIKCIYRNPTECKDRHK 1100


>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
           putative similar to cytosine-5 methyltransferase (METII)
           [Arabidopsis thaliana] GI:6523846; contains Pfam
           profiles PF01426: BAH domain, PF00145: C-5
           cytosine-specific DNA methylase
          Length = 1404

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 187 NEL*LFNLGYVVRAKTLTLHRVHFHFSRESHIALLTL 77
           +EL LFN GY V A+ L    +H      S + L++L
Sbjct: 294 DELVLFNAGYAVDARNLPCRTLHNWALYNSDLMLISL 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,261,706
Number of Sequences: 28952
Number of extensions: 169541
Number of successful extensions: 419
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)