Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0003
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0123 + 974941-975186,975274-977505 28 1.7
10_02_0112 + 5385660-5385821,5386337-5386876 28 2.2
01_06_0373 - 28841462-28842850 28 2.2
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 27 2.9
02_05_0592 - 30210219-30210757,30210898-30210919 27 2.9
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995... 27 3.9
11_01_0013 - 103484-103493,103787-103897,104279-104781,105119-10... 27 3.9
08_02_0902 - 22408895-22409620,22410190-22410326,22410550-224106... 27 3.9
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 27 5.1
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 27 5.1
08_01_1057 + 10761508-10761758,10762155-10762267,10762681-107627... 26 6.7
11_06_0092 + 19973364-19975983,19976272-19976648 26 8.9
07_01_0866 - 7195305-7195756,7197171-7197447 26 8.9
04_04_0276 + 24091360-24091464,24091580-24091713,24091813-240924... 26 8.9
03_06_0043 - 31251772-31251965,31252071-31252158 26 8.9
02_01_0384 - 2781362-2782299,2782320-2782428 26 8.9
>08_01_0123 + 974941-975186,975274-977505
Length = 825
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 150 TEVVKNNPXKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDD 290
T ++ +P +L L +A A A+DG H L +G PDD
Sbjct: 617 TNILNYSPCSVAILVDRGSLSTVAAAAAAADGFPHRVALYFLGGPDD 663
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +3
Query: 51 ICLFTIAIAAMAAVTNLSNVLKNGNDNF--TARMFTEVVKNNPXKSVVLSAFSVLPPLAQ 224
+CL T+ + + ++ +S++LK G +NF ++ + VV+ P K + +F L +
Sbjct: 43 MCLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVR 102
Query: 225 LALASDGETHEELLK 269
L +T + K
Sbjct: 103 LCFNRKNKTLGAIFK 117
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 186 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 329
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 131 VIVSIFEHIREICDGCHCRDGDSKQTNDCLHVCGLRLSNVPRA 3
VI S+ + + C GC C D + T C +VCG++ S + +A
Sbjct: 56 VINSVLDKPKFRC-GCKCVDVNG--TGSCQNVCGIQYSTLDQA 95
>02_05_0592 - 30210219-30210757,30210898-30210919
Length = 186
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 171 PXKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDA 296
P ++V VLP A++ A+ G TH+ ++ +GF D+A
Sbjct: 35 PMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEA 76
>12_01_0013 -
99290-99299,99593-99703,100085-100587,100925-100995,
101413-101491,102336-102956
Length = 464
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 149 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDC 45
K GC+ + + + GCHC DG + + +DC
Sbjct: 386 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 422
>11_01_0013 -
103484-103493,103787-103897,104279-104781,105119-105189,
105607-105685,106530-107153
Length = 465
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 149 KHSGCEVIVSIFEHIREICDGCHCRDG--DSKQTNDC 45
K GC+ + + + GCHC DG + + +DC
Sbjct: 387 KLEGCDQAIGSDAVVEALRGGCHCLDGFRNGNEISDC 423
>08_02_0902 -
22408895-22409620,22410190-22410326,22410550-22410685,
22410787-22411224
Length = 478
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +2
Query: 5 HEGHSRDAGHKHEDNHLFVYYRHRGNGS--RH--KSL*CAQKWKR 127
H+ + G+ +ED H + Y + NGS +H KSL A W R
Sbjct: 157 HKNLVKLIGYCYEDEHRMLVYEYMSNGSLEKHLFKSLDGAMPWMR 201
>11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 26.6 bits (56), Expect = 5.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 101 EICDGCHCR 75
E CDGCHCR
Sbjct: 1322 EYCDGCHCR 1330
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 340 IDRRSRLLLANSVRIASSSGK 278
IDRR RLL NS A++SGK
Sbjct: 644 IDRRRRLLEVNSAVAAAASGK 664
>08_01_1057 +
10761508-10761758,10762155-10762267,10762681-10762733,
10763892-10764248
Length = 257
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 308 FCSYSIVVREADSFQK 261
FCS+S+V R+ D F+K
Sbjct: 88 FCSHSVVTRKHDKFEK 103
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 25.8 bits (54), Expect = 8.9
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +3
Query: 87 AVTNLSNVLKNGNDNFTARMFTEVVKNNPXKSVVLSAFSVLPPLAQLALASDGETHEELL 266
A NLS + + N ++ EV+ N ++ +AFS LP L ++ + + + H +
Sbjct: 206 AFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYN-QFHGRIP 264
Query: 267 KAIGFPDDDAIRT 305
+IG + +I T
Sbjct: 265 ASIGNASNISIFT 277
>07_01_0866 - 7195305-7195756,7197171-7197447
Length = 242
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 213 PLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDL 332
PLA A T E++ IG+ DDD + RD+
Sbjct: 86 PLAAAAADPAPATRREVVLCIGYDDDDLALVDVTYPKRDV 125
>04_04_0276 +
24091360-24091464,24091580-24091713,24091813-24092454,
24092858-24093044
Length = 355
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -2
Query: 92 DGCHCRDGDSKQTNDCLHVCGLRL 21
DGC C D D+ D GLRL
Sbjct: 216 DGCSCADADADADTDAPPCRGLRL 239
>03_06_0043 - 31251772-31251965,31252071-31252158
Length = 93
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 101 EICDG-CHCRDGDSKQTNDCLHVCGL 27
+ CDG C R + + +DCL CG+
Sbjct: 30 DFCDGKCKVRCSKASRHDDCLKYCGV 55
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 331 RSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 188
R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 219 RTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,764,069
Number of Sequences: 37544
Number of extensions: 162628
Number of successful extensions: 528
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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