Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0003
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 30   0.56 
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.3  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      28   2.3  
SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.0  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)               27   4.0  
SB_51461| Best HMM Match : DRMBL (HMM E-Value=2.6)                     27   5.3  
SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)                    27   5.3  
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)               27   5.3  
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)               26   7.0  
SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)               26   7.0  
SB_28992| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         26   7.0  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  
SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8)                     26   9.2  

>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 78  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPXKSVVLSAFSVLPPLAQLALASDG 245
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 86  CHCRDGDSKQTNDCL 42
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 63  TIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPXKSVVLSAFSVLPPLA 221
           T  I  MA  T+ + V + G  +F A   T+V ++    +V + + SVLPP A
Sbjct: 430 TGTIENMAQFTSQAPVAEAGTPSFVAAS-TDVTQSTTIATVNIKSASVLPPTA 481


>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 159 VKNNPXKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAI 299
           ++  P  S VLS  S  PPL  +    +  T   + + I  PD++A+
Sbjct: 221 IELGPQSSGVLSLTSDPPPLEAMGKEGEAHTDSGVEEEIDIPDEEAV 267


>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 243 HQKLKLTEREEAAPKMPRGQRF 178
           H+ L + ER+ ++PK PR  +F
Sbjct: 21  HENLSINERDSSSPKRPRQHQF 42


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +3

Query: 15  IRETQATNMKTI-ICLFTIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPXKSVVL 191
           IR  Q TN   + + +  +A   M   +   N+      N TAR    + ++    ++V+
Sbjct: 53  IRFLQTTNSTIVDMSMSAVANCCMFDESRKENLTSTSILNRTARALANLAEDEK-NAIVI 111

Query: 192 SAFSVLPPLAQLAL-ASDGETHEELLKAI 275
                +  L +L   ASD E  E +L+A+
Sbjct: 112 EELGAIEELTKLLTDASDTECQESVLRAL 140


>SB_19269| Best HMM Match : Pkinase (HMM E-Value=2.4e-38)
          Length = 501

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 134 EVIVSIFEHIREICDGCH 81
           +VI++ +EH +  CDGCH
Sbjct: 356 DVIIARYEHNKCRCDGCH 373


>SB_51461| Best HMM Match : DRMBL (HMM E-Value=2.6)
          Length = 455

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 164 FHYFGKHSGCEVIVSIFEHIREICDGCHCRDGDSKQTNDCLHVCG 30
           FH  G +   E+  S F  + E+ D C    GD  + + C H  G
Sbjct: 294 FHAIGDY---EMFDSCFHMLYEMFDSCFHTIGDYVRIDSCFHTIG 335


>SB_12590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 212 RQHRKCREDNAFPWIIFHYFGKHS 141
           R HR+CR  N   W   H FG H+
Sbjct: 291 RAHRRCRRQNGKRW---HAFGTHT 311


>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
          Length = 1188

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 9   RDIRETQATNMKTIICLFTIAIAAMAAVTNLSNVLK 116
           +DI++TQ TN++ +  +    +  +AA + +++ LK
Sbjct: 164 KDIQQTQPTNIQNLFSVLKSVMDGLAACSRMADKLK 199


>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
          Length = 942

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 5   HEGHSRDAGHKHEDNHLFVYYRHRGNGS 88
           H   + +AG+KH+D      Y+H   GS
Sbjct: 530 HNDTASEAGYKHDDTASEAGYKHNDTGS 557


>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
          Length = 144

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 173 WIIFHYFGKHSGCEVIVSIFEHIREICDGCHCRDG 69
           W   HY     G E+I +IF+ +R+  + C C  G
Sbjct: 57  WAKGHY---SEGAELIDNIFDVLRKEAENCDCMQG 88


>SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
          Length = 1131

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 243 HQKLKLTEREEAAPKMPRGQRF 178
           HQ L + E + ++PK PR  +F
Sbjct: 550 HQNLSINEMDSSSPKRPRQHQF 571


>SB_28992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/48 (20%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -2

Query: 224 LSERRQHRKCREDNAFPWIIFHYFGKHSGC----EVIVSIFEHIREIC 93
           ++  RQ + CR+ +  PW   H+  + +      +++V++ + I+++C
Sbjct: 367 IARERQAKLCRQRSWMPWKNGHWISRTAYSPKRHDLLVNVIKDIKDVC 414


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 243 HQKLKLTEREEAAPKMPRGQRF 178
           HQ L + E + ++PK PR  +F
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQF 77


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 243 HQKLKLTEREEAAPKMPRGQRF 178
           HQ L + E + ++PK PR  +F
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQF 42


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 243 HQKLKLTEREEAAPKMPRGQRF 178
           HQ L + E + ++PK PR  +F
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQF 71


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 243 HQKLKLTEREEAAPKMPRGQRF 178
           HQ L + E + ++PK PR  +F
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQF 42


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 243 HQKLKLTEREEAAPKMPRGQRF 178
           HQ L + E + ++PK PR  +F
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQF 28


>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 55   VCLLSPSRQWQPSQISLMCSKMETITS 135
            +CLLS  ++ QP  I   CS++ T +S
Sbjct: 1383 ICLLSLQQEQQPLNIRSWCSQIPTSSS 1409


>SB_40852| Best HMM Match : SURF6 (HMM E-Value=3.8)
          Length = 296

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 126 DNFTARMFTEVVKNNPXKSVVLSAFSVLPPLAQLALA----SDGETHEELLKAIGFPDDD 293
           D   AR     V NNP K++       LPP+ QL+ A    S  ++  E ++   FP  +
Sbjct: 106 DEVFARNRRHSVGNNPRKAMSYRELKRLPPIKQLSEAIQWPSGIKSGTEKVQFPQFPSAE 165

Query: 294 AIRT 305
            ++T
Sbjct: 166 VLKT 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,118,714
Number of Sequences: 59808
Number of extensions: 185731
Number of successful extensions: 704
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)