Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0003
(342 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72410.1 68414.m08374 COP1-interacting protein-related simila... 30 0.35
At5g37490.1 68418.m04515 U-box domain-containing protein similar... 29 0.61
At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containi... 29 0.61
At5g01060.1 68418.m00009 protein kinase family protein contains ... 29 1.1
At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containi... 29 1.1
At2g20210.1 68415.m02363 leucine-rich repeat family protein cont... 28 1.9
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 1.9
At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ... 27 3.3
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ... 27 3.3
At3g63100.1 68416.m07087 glycine-rich protein 27 3.3
At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containi... 27 3.3
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote... 27 4.3
At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containi... 27 4.3
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 26 5.7
At3g54030.1 68416.m05974 protein kinase family protein contains ... 26 5.7
At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote... 26 7.6
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 25 10.0
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 25 10.0
At3g46200.1 68416.m05001 MutT/nudix family protein similar to he... 25 10.0
At1g77460.1 68414.m09020 C2 domain-containing protein / armadill... 25 10.0
>At1g72410.1 68414.m08374 COP1-interacting protein-related similar
to COP1-Interacting ProteinI 7 (CIP7) [Arabidopsis
thaliana] GI:3327870
Length = 1163
Score = 30.3 bits (65), Expect = 0.35
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 194 REDNAFPWIIFHYFGKHSGCEVIVSIFEHIREICDG 87
R D +++F KHS CE+ VS E ++ G
Sbjct: 2 RSDTVLDYVVFELSPKHSKCELFVSSNEQTEKLASG 37
>At5g37490.1 68418.m04515 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 435
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 218 ERRQHRKCREDNAFPWIIFHYFGKHSGCEVIVSIFEHI 105
E ++RKC +N+ W++ F K SG E + + I
Sbjct: 153 ESEKNRKCVNENSVGWVLCDCFDKFSGDEKLTFMLNEI 190
>At5g08510.1 68418.m01009 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 511
Score = 29.5 bits (63), Expect = 0.61
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 93 TNLSNVLKNGNDNFTARMFTEVVKNNPXKSVVLSAFSVLPPLAQLALASDGETHEELLKA 272
T +S +NGN + +MF + K+ K ++ SVLP A L G E +
Sbjct: 184 TVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARE 243
Query: 273 IGFPDD 290
GF D+
Sbjct: 244 NGFFDN 249
>At5g01060.1 68418.m00009 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 499
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 162 KNNPXKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFA 314
KN P K+ + L P +D + ELL+ +G+ +D+ + EF+
Sbjct: 337 KNLPEKTKPATESLKLTPFGDACSRADLSSIHELLEKLGYEEDNGVGNEFS 387
>At2g02750.1 68415.m00218 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 613
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 191 EDNAFPWIIFHYFGKHSGCEVIVSIFEHIRE 99
+D F ++ +GKH CE + IFE +RE
Sbjct: 434 KDPVFWNVMISGYGKHGECESAIEIFELLRE 464
>At2g20210.1 68415.m02363 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 604
Score = 27.9 bits (59), Expect = 1.9
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 105 NVLKNGNDNFTARMFTEVVKNNPXKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFP 284
N+ KN TAR ++++ P + ++++++PP A L L T + LK +
Sbjct: 503 NISKNRGGLETARFLSKLIPLAPKLISIDASYNLMPPEALLMLCDSLRTAKGDLKRLDMT 562
Query: 285 DDDAIRTE 308
+ I E
Sbjct: 563 GNSCISHE 570
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 14 HSRDAGHKHEDNHLFVYYRHRGNGSRHKS 100
H D H H+ NH ++ H G+ H S
Sbjct: 312 HDHDHDHHHDHNHDHDHHHHDGHDHHHHS 340
>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
identical to serine/threonine-protein kinase CTR1
[Arabidopsis thaliana] SWISS-PROT:Q05609
Length = 821
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 264 LKAIGFPDDDAIRTEFASKSRDLR 335
++++GFP DD R F DLR
Sbjct: 121 IESVGFPQDDGFRLGFGGGGGDLR 144
>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
identical to serine/threonine-protein kinase CTR1
[Arabidopsis thaliana] SWISS-PROT:Q05609
Length = 821
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 264 LKAIGFPDDDAIRTEFASKSRDLR 335
++++GFP DD R F DLR
Sbjct: 121 IESVGFPQDDGFRLGFGGGGGDLR 144
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 2 GHEGHSRDAGHKHEDNHLFVY-YRHRGNGSRHK 97
GH H D GH H H + + HR +G H+
Sbjct: 82 GHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHR 114
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 2 GHEGHSRDAGHKHEDNHLFVYYRHRGNGSRH 94
GH H RD H + H HRG+G H
Sbjct: 105 GHRRHGRDHRHGRDRGH------HRGHGHHH 129
>At1g60770.1 68414.m06841 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 491
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 96 NLSNVLKNGNDNFTARMFTEVVK 164
NL +LKNG DN A +F +++
Sbjct: 431 NLLEILKNGTDNIGAEIFEPLIR 453
>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinases
Length = 1032
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +3
Query: 123 NDNFTARMFTEVVKNNPXKSVVLSAFSVLPPLAQLALASD---GETHEELLKAIGFP 284
+ NF+ + T + NN + +FS LP L L L ++ G + L K I FP
Sbjct: 369 SSNFSKDVTTINLSNNILNGSIPQSFSDLPLLQMLLLKNNMLSGSVPDSLWKNISFP 425
>At3g09060.1 68416.m01065 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 687
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 215 RRQHRKCREDNAFPWIIFHYFGKHSGCEVIVSIFEHIREICDGC 84
R Q KC ED A + +GK+S + + +F+ +REI GC
Sbjct: 70 RSQECKCDEDVALS--VIKTYGKNSMPDQALDVFKRMREIF-GC 110
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +2
Query: 2 GHE-GHSRDAGHKHEDNHLF 58
GH+ GH D GH H+ H +
Sbjct: 157 GHDHGHGHDHGHSHDHGHSY 176
>At3g54030.1 68416.m05974 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 490
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 207 LPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFA 314
L P L D +E+L IG+ DD+ I E +
Sbjct: 338 LTPFGDACLRVDLTAIQEILSKIGYKDDEGIANELS 373
>At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor-like protein kinase
GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
Length = 686
Score = 25.8 bits (54), Expect = 7.6
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +3
Query: 111 LKNGNDNFTARMFTEVVKNNPXKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDD 290
++N D FT T + KN P ++ SVL P+A + + LL+ F D
Sbjct: 1 MRNWEDPFTLACNTALKKNLPSCIFIIIFISVLCPVAMSQVVVPDSDADCLLR---FKDT 57
Query: 291 DAIRTEFAS 317
A +EF S
Sbjct: 58 LANGSEFRS 66
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 2 GHEGHSRDAGHKHEDNH 52
GH GHS D GH H +H
Sbjct: 203 GH-GHSHDNGHGHSHDH 218
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 2 GHEGHSRDAGHKHEDNH 52
GH GHS D GH H +H
Sbjct: 242 GH-GHSHDNGHGHSHDH 257
>At3g46200.1 68416.m05001 MutT/nudix family protein similar to head
organizer protein P17F11 GI:17976973 from [Xenopus
laevis]; contains a NUDIX hydrolase domain IPR000086
Length = 311
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 89 GCHCRDGDSKQTNDCLHVCGLRL 21
G +C D D TN+ HVC LRL
Sbjct: 75 GGYCLDDDDGSTNEVPHVC-LRL 96
>At1g77460.1 68414.m09020 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2110
Score = 25.4 bits (53), Expect = 10.0
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +3
Query: 63 TIAIAAMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPXKSVVLSAFSVLPPLAQLALASD 242
T+ +A + A+ L ++L++ + EV+ NNP + + PL+Q L D
Sbjct: 1687 TVQMAELGAIDALLDLLRSHQCEEESGSLLEVIFNNPRVRELKLCKYAIAPLSQYLL--D 1744
Query: 243 GETHEE---LLKAIGFPD 287
T E LL A+ D
Sbjct: 1745 PHTRSEPGRLLAALALGD 1762
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,028,511
Number of Sequences: 28952
Number of extensions: 128699
Number of successful extensions: 467
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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