Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0002
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    29   0.46 
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   1.9  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   4.3  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   5.7  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   10.0 

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 206 KDLARSCVGGEELQQQKEKIQNLAEETASALKKNVYENYMQFIETATEISHLETEM 373
           K++ R+    + +Q +K   Q + EE    L++NV  NY  FIE +  +S++   +
Sbjct: 15  KEIFRTHSIAQTIQLEKFVSQQI-EEKGRELQQNVCFNYQSFIEASENLSNIRNNL 69


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +2

Query: 146 MSEIDMDKFAVPDFVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASAL 298
           + ++++    + +   E  +KD+    +  +EL+ + E +QNLAEE    L
Sbjct: 19  LEDVEIQDDDIQEVSKEDLLKDVRVRSIQFDELESKIEGLQNLAEEKLKVL 69


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 239 ELQQQKEKIQNLAEETASALKKNVYENYMQFIETATEI 352
           ELQ ++EKIQ L  E    L+K  YEN  + + +  ++
Sbjct: 581 ELQGKEEKIQYLETENEEVLQK--YENLQEELSSTRKL 616


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 242 LQQQKEKIQNLAEETASALKKNVYENYMQ 328
           +Q++KEK + LAEE A   +K   E  +Q
Sbjct: 876 IQREKEKARRLAEEEALLKEKQERERQLQ 904


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +2

Query: 119 KYTINTCATMSEIDMDKFAVPDFVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASAL 298
           +Y    C T  E  +DK       P    K   R   G E  +++K K +   +E    L
Sbjct: 98  RYAGRLCGTFEEDLVDKSLDSSVSPVSSKKVKVRKTSGKESSKREKSKKKKEKKEKKDKL 157

Query: 299 KK 304
           KK
Sbjct: 158 KK 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,805
Number of Sequences: 5004
Number of extensions: 45736
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)