Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0002
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545...    48   9e-06
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689...    47   2e-05
08_02_0075 - 11953723-11956203,11958213-11958512                       31   0.64 
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    31   1.1  
04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189     30   1.9  
08_02_0687 + 20053426-20053824,20054194-20054508                       29   2.6  
07_03_1121 - 24130451-24130462,24130827-24131255                       28   7.8  

>07_01_0714 -
           5451246-5451408,5453401-5453534,5453608-5453796,
           5454313-5454825,5455815-5456856,5457283-5457380,
           5458224-5458451
          Length = 788

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 24/72 (33%), Positives = 43/72 (59%)
 Frame = +2

Query: 170 FAVPDFVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASALKKNVYENYMQFIETATE 349
           F   +F P+ YV+   ++ +  +E++     +Q+L + +A  ++++VY NY  FI T+ E
Sbjct: 55  FKTDNFDPDAYVQSKCQT-MNEKEIRHLCSYLQDLKKASAEEMRRSVYANYAAFIRTSKE 113

Query: 350 ISHLETEMSSYR 385
           IS LE E+ S R
Sbjct: 114 ISDLEGELLSIR 125


>03_06_0358 +
           33366265-33366447,33367371-33367468,33367910-33368945,
           33369042-33369554,33370456-33370644,33370715-33370848,
           33371196-33371358
          Length = 771

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 43/75 (57%)
 Frame = +2

Query: 161 MDKFAVPDFVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASALKKNVYENYMQFIET 340
           M  F   +F P+ YV+    + +  +E++     +Q+L + ++  ++++VY NY  FI T
Sbjct: 37  MKIFKTDNFDPDAYVQSKCHA-MNEKEIRHLCSYLQDLKKASSEEMRRSVYANYAAFIRT 95

Query: 341 ATEISHLETEMSSYR 385
           + EIS LE E+ S R
Sbjct: 96  SKEISDLERELLSVR 110


>08_02_0075 - 11953723-11956203,11958213-11958512
          Length = 926

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +2

Query: 68  PIESNDVRASVL**IRKKYTIN--TCATMSEIDMDKFAVPDFVPERYVKDLARSCVGGEE 241
           P+ S   + +VL    +K ++   T  T + ID+D     DF          + C+ G+E
Sbjct: 313 PLRSAQAKGNVLLVTTRKLSVARITSNTEAHIDLDGMKKDDFWL------FFKRCIFGDE 366

Query: 242 LQQQKEKIQNLAEETASALKKN 307
             Q + K+QN+A++ A+ L  N
Sbjct: 367 NYQGQRKLQNIAKKIATRLNGN 388


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -1

Query: 518 FVPLLPSQPRRRDYQETRVINRSRXPRIEAWESTVSTERCSLNKCDSLTFLFRGGISPSQ 339
           + PL+PSQP      E+ V+N  + P   +  +T +T+   ++   +L +L  G   P  
Sbjct: 265 YTPLVPSQPHYNLNLESIVVNGQKLPIDSSLFTTSNTQGTIVDSGTTLAYLADGAYDPFV 324

Query: 338 SR*TA 324
           +  TA
Sbjct: 325 NAITA 329


>04_03_0695 + 18790491-18790565,18791299-18791427,18792981-18794189
          Length = 470

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 236 EELQQQKEKIQNLAEETASALKKNVYENYMQFIETATEISHLETEMSSY 382
           EELQ+++E +Q   E     ++  + E  +QF E    I+ L  E+ +Y
Sbjct: 256 EELQKEREMLQLADEWREQRVQMKLLEARLQFEEKNAAINQLHDELQAY 304


>08_02_0687 + 20053426-20053824,20054194-20054508
          Length = 237

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/42 (30%), Positives = 28/42 (66%)
 Frame = +2

Query: 176 VPDFVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASALK 301
           +P FV + +V+ LAR+     E +++KEK +N  + +++A++
Sbjct: 99  LPAFVVQLFVRILARARFEAREAKKEKEKRENNEKTSSTAIR 140


>07_03_1121 - 24130451-24130462,24130827-24131255
          Length = 146

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 151 GHRCTCIYCIL-LSYLSQNTGSHIIR 77
           GHRC C  CI+ + ++S++   H+ R
Sbjct: 47  GHRCVCARCIVQVRFVSEDRRCHVCR 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,160,062
Number of Sequences: 37544
Number of extensions: 283910
Number of successful extensions: 700
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)