SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0002
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical ...    50   2e-06
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    50   2e-06
AC024877-11|AAF60897.2|  621|Caenorhabditis elegans Hypothetical...    31   0.75 
AC024877-10|ABA00174.1|  613|Caenorhabditis elegans Hypothetical...    31   0.75 
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    28   7.0  
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    28   7.0  
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2b protein.
          Length = 339

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 6/173 (3%)
 Frame = +2

Query: 170 FAVPDFVPERYVKDLARSCVGGEE---LQQQKEKIQNLAEETASALKKNVYENYMQFIET 340
           F    F P  Y++D  +    G+E   L+  + ++  L   +   LK NV+ NY QFI+ 
Sbjct: 9   FQTDAFSPSDYIRDRLKGVKIGDETRKLRHLRSEMGALNHASQETLKNNVFRNYQQFIDA 68

Query: 341 ATEISHLETEMSSYRIC*ANSVLC*LCSPTPQSSXNENGLSRESLDNHDVXXXXXXXXXK 520
           + EISHLE E+  Y++   +S++        ++     G  + S+  H V          
Sbjct: 69  SKEISHLEREI--YQL--THSLI--EQKQVIENLIMMTGDDKSSI--HTVSSHSTTTSTT 120

Query: 521 NKLNLITEKVE---SCMNLLDVPDRTLLHEGDLLEIDAEENTGLQRMRVYLFN 670
           N + ++ +K+E     +N +   ++ +L+ G++ + D E    +Q+  + L +
Sbjct: 121 NPIQILMQKMEGIGGILNNMSTSEKVILY-GEMEQFDVETKKPVQKCMLILLS 172


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 6/173 (3%)
 Frame = +2

Query: 170 FAVPDFVPERYVKDLARSCVGGEE---LQQQKEKIQNLAEETASALKKNVYENYMQFIET 340
           F    F P  Y++D  +    G+E   L+  + ++  L   +   LK NV+ NY QFI+ 
Sbjct: 9   FQTDAFSPSDYIRDRLKGVKIGDETRKLRHLRSEMGALNHASQETLKNNVFRNYQQFIDA 68

Query: 341 ATEISHLETEMSSYRIC*ANSVLC*LCSPTPQSSXNENGLSRESLDNHDVXXXXXXXXXK 520
           + EISHLE E+  Y++   +S++        ++     G  + S+  H V          
Sbjct: 69  SKEISHLEREI--YQL--THSLI--EQKQVIENLIMMTGDDKSSI--HTVSSHSTTTSTT 120

Query: 521 NKLNLITEKVE---SCMNLLDVPDRTLLHEGDLLEIDAEENTGLQRMRVYLFN 670
           N + ++ +K+E     +N +   ++ +L+ G++ + D E    +Q+  + L +
Sbjct: 121 NPIQILMQKMEGIGGILNNMSTSEKVILY-GEMEQFDVETKKPVQKCMLILLS 172


>AC024877-11|AAF60897.2|  621|Caenorhabditis elegans Hypothetical
           protein Y95B8A.12a protein.
          Length = 621

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +2

Query: 557 CMNLLDVPDRTLLHEGDLLEIDAEENTGLQRMRVYLFND 673
           C NLL  P R L+HEG L   +  EN     M  +LFND
Sbjct: 423 CENLLAHPRRKLIHEGPL---ELVENGRTVDMYAFLFND 458


>AC024877-10|ABA00174.1|  613|Caenorhabditis elegans Hypothetical
           protein Y95B8A.12b protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +2

Query: 557 CMNLLDVPDRTLLHEGDLLEIDAEENTGLQRMRVYLFND 673
           C NLL  P R L+HEG L   +  EN     M  +LFND
Sbjct: 415 CENLLAHPRRKLIHEGPL---ELVENGRTVDMYAFLFND 450


>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
            T28B8.3a protein.
          Length = 1838

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +1

Query: 265  TKFSRRNRKCPKEKCLRELYAVYRDCDGDIPPRNRNVKLSHLLSEQRSVLTVLSHASIL 441
            T F  R  KC  E  + + + V +   G +   ++N++  HLL  +  V+ +L+ A ++
Sbjct: 985  TDFDERILKCLLELSVNDYFTVQKRASGYLKTISQNIRCRHLLIPR--VVEILTDAKLV 1041


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 500 SQPRRRDYQETRVINRSRXPRIEAWESTVSTERCSLNKCDSLTFLFRGGISPSQSR 333
           S PR+R  + +R  +RSR P    W    S  R       +LT+     +SPS+SR
Sbjct: 353 SPPRKRPVRRSRSRSRSRTPN-RNWTRARSRTRSQAKSSSTLTW----PLSPSRSR 403


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -2

Query: 229 DAGSSEVFYVTFGDE-----VWDSKLIHIYLGHRCTCIYCILLSYLSQNTGSHIIRFY 71
           + G   VF+  F ++     VW   L+ + L + C  +   ++ YL++NT + II  +
Sbjct: 85  NTGKKPVFFSNFSNKSIFFAVWGVGLLFVTLINMCAVVGIGVMRYLTKNTYNQIITLF 142


>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical
           protein W03A3.2 protein.
          Length = 1540

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 155 IDMDKFAV-PDFVPERYVKDLARSCVGGEELQQQKEKIQNLAEETASALKKNVYENYMQF 331
           +++ KF    + + E     L  SC G E+  ++KE I  + E T S  + ++ +N + F
Sbjct: 705 VELPKFEENEENIQESCDSGLPDSCEGMEDELEEKENIVKMEEMTKSVTEMSLTDNTISF 764


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,026,637
Number of Sequences: 27780
Number of extensions: 260343
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -