Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0001
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 90 3e-19
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 83 5e-17
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 62 8e-11
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 50 5e-07
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 49 6e-07
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 49 6e-07
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 49 8e-07
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 48 1e-06
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 47 3e-06
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 40 4e-04
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 39 9e-04
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 38 0.001
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 38 0.002
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 37 0.004
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 37 0.004
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 36 0.005
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 36 0.008
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 34 0.025
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 32 0.100
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 32 0.100
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 31 0.23
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 31 0.23
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 29 0.70
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces... 28 1.2
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 2.1
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 27 2.1
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 3.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 5.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.0
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 6.6
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 6.6
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 26 6.6
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 26 6.6
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 6.6
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 6.6
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce... 26 6.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 6.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.7
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.7
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 25 8.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 90.2 bits (214), Expect = 3e-19
Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)
Frame = +2
Query: 185 TFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNG-STG 361
++++L Y +Q + +L + G G+LTA++G SGAGK++LLN+LA G TG
Sbjct: 883 SWRNLNYDIQIKGEHRRLLNGVQGFVVPGKLTALMGESGAGKTTLLNVLAQRVDTGVVTG 942
Query: 362 LISTNGLPRDLRQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXX 541
+ NG D F++ + Y+ Q+D+ TV EA+ +A L+ +
Sbjct: 943 DMLVNGRGLD-STFQRRTGYVQQQDVHIGESTVREALRFSAALRQPASVPLSEKYEYVES 1001
Query: 542 IIQLLRLGKAR----NTATERLSGGERKRLSIGLELLNNPP-VIFLDEPTTGLDDVASST 706
+I+LL + T L+ +RKR +IG+EL P ++FLDEPT+GLD ++ +
Sbjct: 1002 VIKLLEMESYAEAIIGTPGSGLNVEQRKRATIGVELAAKPALLLFLDEPTSGLDSQSAWS 1061
Query: 707 CVSLLKRVARGGR 745
V L+++A G+
Sbjct: 1062 IVCFLRKLADAGQ 1074
Score = 37.9 bits (84), Expect = 0.002
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 14/182 (7%)
Frame = +2
Query: 230 KIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNGST--GLISTNGLPR-DLRQ 400
K IL + +G+L +LG G+G S+ L + V+ G +G+ + D+++
Sbjct: 174 KAILSHCHALANAGELVMVLGQPGSGCSTFLRSVTSDTVHYKRVEGTTHYDGIDKADMKK 233
Query: 401 FRKMSR-YIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLL---RLG- 565
F Y + D+ P +T E + AA + + + L G
Sbjct: 234 FFPGDLLYSGENDVHFPSLTTAETLDFAAKCRTPNNRPCNLTRQEYVSRERHLIATAFGL 293
Query: 566 ------KARNTATERLSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLLKR 727
K N +SGGERKR++I P + D T GLD + V++L+
Sbjct: 294 THTFNTKVGNDFVRGVSGGERKRVTISEGFATRPTIACWDNSTRGLDSSTAFEFVNVLRT 353
Query: 728 VA 733
A
Sbjct: 354 CA 355
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 82.6 bits (195), Expect = 5e-17
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 6/193 (3%)
Frame = +2
Query: 182 ITFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNGST- 358
+ ++DL +TV S K IL +++G + LTA+LG + +GKS LL IL+ + GS
Sbjct: 758 LCWRDLNFTVVTKTSKKQILTNVSGYLKKNTLTALLGENKSGKSVLLRILSQRGIAGSVE 817
Query: 359 GLISTNGLPRDLRQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXX 538
G I+ +GL ++ + RK Y+ + L TV E + + A L+
Sbjct: 818 GEITLSGL-KNPKNLRKRIGYVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQYAYVE 876
Query: 539 XIIQLLRLGKARNTATERLSGG----ERKRLSIGLELLNNP-PVIFLDEPTTGLDDVASS 703
+I L LG+ + + G ++ LSI +EL P ++ LDEP GLD ++
Sbjct: 877 YVIDFLGLGEVADFIVGDMGKGLSLYHKRLLSIAVELSARPGSILLLDEPANGLDSQSAW 936
Query: 704 TCVSLLKRVARGG 742
V +L+++AR G
Sbjct: 937 MLVCILQKLARSG 949
Score = 27.9 bits (59), Expect = 1.6
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 12/175 (6%)
Frame = +2
Query: 236 ILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGY-----RVNGSTGLISTNGLPRDL-- 394
+++ +G + G +LG G+G S+LL L G R+NGS + +GL +
Sbjct: 91 LVKGFDGYLQPGSSLLVLGHEGSGGSTLLKALCGIVEENERLNGS---LHYDGLDYKIAH 147
Query: 395 RQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLR----L 562
QF+ Y + ITV + +L + I +++R L
Sbjct: 148 SQFKADLSYCGEGHSKVATITVRRLLEFVCSCRLPASKYDHPRSHYIRRICEIIRDAFDL 207
Query: 563 GKARNTATERL-SGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLLK 724
G N R+ + G++ ++ + + P + D D ++ +S +K
Sbjct: 208 GDFYNHRILRVFNSGDQIKVDVAQTMCARPLIQCWDNNMRDFDSISVIDILSRIK 262
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 62.1 bits (144), Expect = 8e-11
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 6/192 (3%)
Frame = +2
Query: 182 ITFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRV--NGS 355
I F+ + ++ R K+ LR LN + GQ A +G SG GKS+ + ++ + NG+
Sbjct: 1119 IEFRQVEFSYPTRRHIKV-LRGLNLTVKPGQFVAFVGSSGCGKSTTIGLIERFYDCDNGA 1177
Query: 356 TGLISTNGLPRDLRQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXX 535
+ N ++ +RK + QE L TV E + + A +
Sbjct: 1178 VLVDGVNVRDYNINDYRKQIALVSQEPTLYQG-TVRENIVLGASKDVSEEEMIEACKKAN 1236
Query: 536 XXIIQLLRLGKARNTATER----LSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASS 703
+L L NT + LSGG+++R++I L+ NP ++ LDE T+ LD +
Sbjct: 1237 IHEF-ILGLPNGYNTLCGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSHSEK 1295
Query: 704 TCVSLLKRVARG 739
L ++G
Sbjct: 1296 VVQEALNAASQG 1307
Score = 39.9 bits (89), Expect = 4e-04
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Frame = +2
Query: 266 SGQLTAILGPSGAGKSSLLNILAGYR--VNGSTGLISTNGLPRDLRQFRKMSRYIMQEDL 439
SG++TA++G SG+GKS+++ ++ + + G L + ++ R + QE +
Sbjct: 447 SGKITALVGASGSGKSTIIGLVERFYDPIGGQVFLDGKDLRTLNVASLRNQISLVQQEPV 506
Query: 440 LQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLRLGKARNTATER--------- 592
L TV E ++ + +L T E+
Sbjct: 507 LFA-TTVFENITYGLPDTIKGTLSKEELERRVYDAAKLANAYDFIMTLPEQFSTNVGQRG 565
Query: 593 --LSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLLKRVAR 736
+SGG+++R++I ++++P ++ LDE T+ LD + L +R
Sbjct: 566 FLMSGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDNASR 615
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 49.6 bits (113), Expect = 5e-07
Identities = 47/168 (27%), Positives = 77/168 (45%)
Frame = +2
Query: 236 ILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNGSTGLISTNGLPRDLRQFRKMS 415
IL+ ++ D + ++GP+GAGKS++L +L +++ ++G++S + PR LR
Sbjct: 533 ILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIE-QLHPTSGIVSRH--PR-LRIAYFAQ 588
Query: 416 RYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLRLGKARNTATERL 595
++ DL L A+S A G G + L L K L
Sbjct: 589 HHVDTLDLN------LNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQKMIT-----L 637
Query: 596 SGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLLKRVARG 739
SGG++ R++ L NP ++ LDEPT LD + +KR G
Sbjct: 638 SGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAVKRFQGG 685
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 581 ATERLSGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
AT+ SGG R RLS+ L P ++ LDEP+ LD
Sbjct: 351 ATKTFSGGWRMRLSLARALFCQPDLLLLDEPSNMLD 386
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 49.2 bits (112), Expect = 6e-07
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 3/173 (1%)
Frame = +2
Query: 230 KIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGY-RVNGSTGLISTNGLPRDLRQFR 406
K +L +N + G++ A++G SG GKS+++ IL + VN + I +
Sbjct: 597 KPVLSDINFVAQPGKVIALVGESGGGKSTIMRILLRFFDVNSGSITIDDQDIRNVTLSSL 656
Query: 407 KMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLRLGKARNTAT 586
+ S ++ +D T+L + A I G
Sbjct: 657 RSSIGVVPQDSTLFNDTILYNIKYAKPSATNEEIYAAAKAAQIHDRILQFPDGYNSRVGE 716
Query: 587 E--RLSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLLKRVARG 739
+LSGGE++R+++ +L +P +I LDE T+ LD + L R+A G
Sbjct: 717 RGLKLSGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNRLASG 769
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 49.2 bits (112), Expect = 6e-07
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 4/163 (2%)
Frame = +2
Query: 221 RSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNGSTGLISTNGLP---RD 391
R S I +L+ D G AI+ PSG GKS++ +L + S+G I +G+ +
Sbjct: 494 RPSASIFDNLSFDIHPGTNVAIVAPSGGGKSTISQLLLRFYAP-SSGKILADGVDISTYN 552
Query: 392 LRQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLRLGKA 571
+ Q+R + QE +L T+ E ++ ++
Sbjct: 553 VHQWRSHFGLVGQEPVLFSG-TIGENIAYGKSNASQEEIEDAAKRANCSFVLSFPEKWST 611
Query: 572 R-NTATERLSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVA 697
+ T +LSGG+++R++I LL NP + LDE T+ LD A
Sbjct: 612 QVGTRGLQLSGGQKQRIAIARALLRNPAFLILDEATSALDGEA 654
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 48.8 bits (111), Expect = 8e-07
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 5/193 (2%)
Frame = +2
Query: 137 GRAHLSHLPQRPLVN-ITFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKS 313
G H S + PLV I F +++ + + L +++ + + AI+G SG+GKS
Sbjct: 1083 GNLHKSGYLKFPLVGKIEFDGVSFAYPDSERNHLALNNVSLSIEAREKVAIVGISGSGKS 1142
Query: 314 SLLNILAGYRVNGSTGLISTNGLPR---DLRQFRKMSRYIMQEDLLQPFITVLEAMSMAA 484
+L+ +L R + I +G P D K + Q+ L T+LE++
Sbjct: 1143 TLVELL---RKTYPSEDIYIDGYPLTNIDTNWLLKKVAIVDQKPHLLGS-TILESLLYGV 1198
Query: 485 DLKLGSGXXXXXXXXXXXXIIQLLR-LGKARNTATERLSGGERKRLSIGLELLNNPPVIF 661
D + S I L L ++ SGG+ +RL+ LL NP ++
Sbjct: 1199 DRDINSVMDALDKTYMTEVIQNLPNGLDTPLLEFSKNFSGGQIQRLAFARALLRNPRLLI 1258
Query: 662 LDEPTTGLDDVAS 700
LDE T+ LD +S
Sbjct: 1259 LDECTSALDSKSS 1271
Score = 46.0 bits (104), Expect = 6e-06
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 3/160 (1%)
Frame = +2
Query: 269 GQLTAILGPSGAGKSSLLNILAGYRVNGSTGLISTNGLPR---DLRQFRKMSRYIMQEDL 439
G+L I+GPSG+GKS+ +++L Y + + G I + P D + Q+ +
Sbjct: 462 GELVHIIGPSGSGKSTFISLLLRY-FSPTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPV 520
Query: 440 LQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLRLGKARNTATERLSGGERKRL 619
+ +T+ E + M + S LSGG+++R+
Sbjct: 521 IFD-MTIRENIIMRNENASESDFEEVCRLALVDEFALTFDQSYDTPCKEASLSGGQQQRI 579
Query: 620 SIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLLKRVARG 739
++ LL + ++ LDEPT+ LD + + + ++ +G
Sbjct: 580 ALARALLRDTEILILDEPTSALDPITKNLVMDAIRAHRKG 619
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 48.0 bits (109), Expect = 1e-06
Identities = 49/183 (26%), Positives = 82/183 (44%)
Frame = +2
Query: 176 VNITFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNGS 355
+ +T +L+YT + L + D G T ++G +GAGKS+LL +L+G +
Sbjct: 1 MEVTVSNLSYTFSP--KQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSL-AK 57
Query: 356 TGLISTNGLPRDLRQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXX 535
G IS G R+ Y+ E + P I MS+A +L +
Sbjct: 58 AGHISVGGKD-PFRESSSAFVYLGTEWVNNPVIH--RDMSVA---RLIASVGGDKFAERR 111
Query: 536 XXIIQLLRLGKARNTATERLSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVS 715
+I +L + +S GER+R+ + + LL V+ LDE T LD +A + ++
Sbjct: 112 DFLISILDIDL--RWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLN 169
Query: 716 LLK 724
L+
Sbjct: 170 FLQ 172
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 46.8 bits (106), Expect = 3e-06
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 4/174 (2%)
Frame = +2
Query: 179 NITFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAG-YRVNGS 355
+I F ++ ++ R IL + + +G A +G SG GKS++L +L Y +
Sbjct: 442 SIQFDNVHFSYNPNRP---ILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTDSG 498
Query: 356 TGLISTNGLPR-DLRQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXX 532
LI L + L RK + Q+ L T+L +
Sbjct: 499 KILIDNQRLDQITLNSLRKAIGVVPQDTPLFND-TILYNIGYGNPKASNDEIVEAAKKAK 557
Query: 533 XXXIIQLLRLGKARNTATERL--SGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
II+ G L SGGE++RL++ LL NP ++F DE T+ LD
Sbjct: 558 IHDIIESFPEGYQTKVGERGLMISGGEKQRLAVSRLLLKNPEILFFDEATSALD 611
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 39.9 bits (89), Expect = 4e-04
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 1/174 (0%)
Frame = +2
Query: 170 PLVNITFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVN 349
P I FQD+++ G + I LN A++GP+GAGK++L+ ++ +V
Sbjct: 590 PSPAIKFQDVSFNYPGGPT---IFSKLNFGLDLKSRVALVGPNGAGKTTLIKLIL-EKVQ 645
Query: 350 GSTG-LISTNGLPRDLRQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXX 526
STG ++ +GL L F + D L ++ +E + K G+
Sbjct: 646 PSTGSVVRHHGL--RLALFNQ-----HMGDQLDMRLSAVEWLR----TKFGN----KPEG 690
Query: 527 XXXXXIIQLLRLGKARNTATERLSGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
+ + GK++ +LS G+R+R+ + P ++ LDEPT LD
Sbjct: 691 EMRRIVGRYGLTGKSQVIPMGQLSDGQRRRVLFAFLGMTQPHILLLDEPTNALD 744
Score = 34.3 bits (75), Expect = 0.019
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Frame = +2
Query: 230 KIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILA-GYRVNGST---GLISTNGLPRDL- 394
K++++ + +G+ ++ P+G+GKS+LL+ +A G S+ L+ +P +L
Sbjct: 288 KLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAIACGLIPTPSSLDFYLLDREYIPNELT 347
Query: 395 ---------RQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXXII 547
Q RK +M++ L P +E ++ L + I+
Sbjct: 348 CVEAVLDINEQERKHLEAMMEDLLDDPDKNAVELDTIQTRL---TDLETENSDHRVYKIL 404
Query: 548 QLLRL-GKARNTATERLSGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
+ L+ + T LSGG R R+++ L P ++ LDEPT LD
Sbjct: 405 RGLQFTDEMIAKRTNELSGGWRMRIALARILFIKPTLMMLDEPTNHLD 452
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 38.7 bits (86), Expect = 9e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +2
Query: 263 RSGQLTAILGPSGAGKSSLLNILAGYRVN 349
R G AILGPS AGKSSL+N+LA R++
Sbjct: 237 RKGINVAILGPSNAGKSSLINLLANRRIS 265
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 38.3 bits (85), Expect = 0.001
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Frame = +2
Query: 227 SKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNGSTGLISTNGLPRDLRQFR 406
+KI+L + G+ + GP+G+GKS+L+ + +V G + T + D+ +
Sbjct: 446 AKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVNGQVEGFPTHLRTVYVEHDIDESE 505
Query: 407 KMSRYIMQEDLLQ-PFITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLRLGKARNTA 583
+ + + +LQ P + + + + LK S +L+ N
Sbjct: 506 ADTPSV--DFILQDPAVPIKDRDEIVKALKENSFTD------------ELI------NMP 545
Query: 584 TERLSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDV 694
LSGG + +L++ + NP ++ LDEPT LD V
Sbjct: 546 IGSLSGGWKMKLALTRAMFKNPDILLLDEPTNHLDVV 582
Score = 32.3 bits (70), Expect = 0.076
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 164 QRPLVNITFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAG 337
QR ++ + Y +SK L ++ A++GP+GAGKS+L+ +L G
Sbjct: 669 QRAIIKVQHMSFQYP----GTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTG 722
Score = 29.5 bits (63), Expect = 0.53
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 593 LSGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
LSGG++ +L + P VI LDEPT LD
Sbjct: 904 LSGGQKVKLVLAACTWLRPHVIVLDEPTNYLD 935
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 37.9 bits (84), Expect = 0.002
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 16/169 (9%)
Frame = +2
Query: 230 KIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAG----YRVNGSTGLISTNGLPRDLR 397
++++ + + GQ +LG +G+GKS+ L +A Y + + L++ P D+
Sbjct: 88 RLLIENATIELNHGQRYGLLGDNGSGKSTFLESVAARDVEYPEHIDSYLLNAEAEPSDVN 147
Query: 398 QFRKMSRYIMQ--EDLLQPFITVLEAMSMAADL-------KLGSGXXXXXXXXXXXXIIQ 550
YI+Q +D +Q +E +S A D+ K +
Sbjct: 148 AVD----YIIQSAKDKVQKLEAEIEELSTADDVDDVLLESKYEELDDMDPSTFEAKAAMI 203
Query: 551 LLRLGKARNTA---TERLSGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
L LG + T+ +SGG R R+++ L P ++ LDEPT LD
Sbjct: 204 LHGLGFTQEMMAKPTKDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLD 252
Score = 37.5 bits (83), Expect = 0.002
Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 1/188 (0%)
Frame = +2
Query: 182 ITFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNGSTG 361
I F D+ ++ G + R L+ AI+G +G GKS+LLN++ G +
Sbjct: 388 IAFNDVAFSYD-GNLDHALYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIEGN 446
Query: 362 LISTNGLPRDLRQFRKMSRYIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXX 541
+ +GL KM++Y P+ + + +
Sbjct: 447 VSRYSGL--------KMAKYSQHSADQLPY----DKSPLEYIMDTYKPKFPERELQQWRS 494
Query: 542 IIQLLRLGKARNTATER-LSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSL 718
++ L T+ R LS G + R+ L P ++ LDEPT L D+ S ++
Sbjct: 495 VLGKFGLSGLHQTSEIRTLSDGLKSRVVFAALALEQPHILLLDEPTNHL-DITSIDALAK 553
Query: 719 LKRVARGG 742
V GG
Sbjct: 554 AINVWTGG 561
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 36.7 bits (81), Expect = 0.004
Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Frame = +2
Query: 239 LRSLNGDFRSGQLTAILGPSGAGKSSLLNILAG-YRVN-GSTGLISTNGLPRDLRQFRKM 412
LR LN F +L+ ++GP+G+GKSSL++ L G +N GS L + G+ + Q +
Sbjct: 631 LRDLNIVFPRNKLSIVIGPTGSGKSSLISALLGELSLNKGSYNLPRSKGVSY-VSQVPWL 689
Query: 413 SRYIMQEDLL--QPFI-----TVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLRLGKA 571
+++++L P+I V++A + DL+ L +G+
Sbjct: 690 RNATIRDNILFDYPYIEERYKKVIQACGLLTDLQ-------------SFVASDLTEIGEK 736
Query: 572 RNTATERLSGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
T LSGG+++R+++ + + ++ +D+ + LD
Sbjct: 737 GVT----LSGGQKQRIALARAVYSPTSIVLMDDVFSALD 771
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 593 LSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLL 721
LS G+ +R + +L+ P ++ LDEP GLD + S SLL
Sbjct: 149 LSNGQSRRAMLASKLVQRPQLLLLDEPYAGLDVTSRSVLSSLL 191
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 239 LRSLNGDFRSGQLTAILGPSGAGKSSLLNILAG--YRVNGS 355
LR +N ++G+LT I G GAGKSSLL G Y+ +GS
Sbjct: 597 LRQINFVAKNGELTCIFGKVGAGKSSLLEACMGNMYKNSGS 637
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 593 LSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLL 721
LSGG++ R+S+ + + + LD+ + +D S + L
Sbjct: 704 LSGGQKSRISLARAIYSQADIYLLDDVLSSVDQHVSRDLIKNL 746
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 593 LSGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
LSGG++ ++ I L NNP ++ LDEPT LD
Sbjct: 911 LSGGQKVKVVIAACLWNNPQLLVLDEPTNFLD 942
Score = 32.3 bits (70), Expect = 0.076
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 281 AILGPSGAGKSSLLNILAG 337
AILGP+GAGKS+L+ +L G
Sbjct: 723 AILGPNGAGKSTLIKVLIG 741
Score = 31.1 bits (67), Expect = 0.17
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 593 LSGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
LSGG + +L + +L ++ LDEPT LD
Sbjct: 563 LSGGWKMKLELARAMLQKADILLLDEPTNHLD 594
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 230 KIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRV 346
+++L N G ++G +G GKS+LL + Y+V
Sbjct: 457 RLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKV 495
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 33.9 bits (74), Expect = 0.025
Identities = 41/196 (20%), Positives = 82/196 (41%), Gaps = 12/196 (6%)
Frame = +2
Query: 173 LVNITFQDLTYTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNG 352
L +++ ++LT + G+++ +L +N + + AI+G +G+GKS++ L + +
Sbjct: 1177 LGHVSIKNLTVSYSIGQAA--VLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIM 1234
Query: 353 STGLISTNGLP---RDLRQFRKMSRYIMQEDLL---------QPFITVLEAMSMAADLKL 496
S G + +G+ DL R+ I Q+ +L PF + + LK
Sbjct: 1235 S-GAVEVDGIDINSLDLEVLRQRISLIPQDPVLISGTVRSNLDPFEEYGDG-ELNEILKT 1292
Query: 497 GSGXXXXXXXXXXXXIIQLLRLGKARNTATERLSGGERKRLSIGLELLNNPPVIFLDEPT 676
S + L ++ S G+R+ L++ L+ ++ LDE T
Sbjct: 1293 ASCESLVQASNKNSLDAFAIHLDTPVDSGGVNFSSGQRQILALARALVRKSRIVILDEST 1352
Query: 677 TGLDDVASSTCVSLLK 724
+DD +L+
Sbjct: 1353 ASVDDTTDRRIQQMLR 1368
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 31.9 bits (69), Expect = 0.100
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 8/170 (4%)
Frame = +2
Query: 203 YTVQAGRSSKIILRSLNGDFRSGQLTAILGPSGAGKSSLLNILAGYRV----NGSTGLIS 370
Y+V+ + ++L ++ + + + I+G +GAGKS+L LA +R+ +G L
Sbjct: 1229 YSVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTL--TLALFRLIEPTSGDIQLDD 1286
Query: 371 TNGLPRDLRQFRKMSRYIMQEDLLQPFI-TVLEAMSMAADLKLGSGXXXXXXXXXXXXII 547
N L R I QE+ Q F T+ E + A+ I
Sbjct: 1287 INITSIGLHDLRSRLAIIPQEN--QAFEGTIRENLDPNAN-ATDEEIWHALEAASLKQFI 1343
Query: 548 QLLRLGKARNTATE---RLSGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
Q L G + TE LS G+R+ + + LL V+ LDE T +D
Sbjct: 1344 QTLD-GGLYSRVTEGGANLSSGQRQLMCLTRALLTPTRVLLLDEATAAVD 1392
Score = 29.1 bits (62), Expect = 0.70
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 239 LRSLNGDFRSGQLTAILGPSGAGKSSLLNILAG 337
LR ++ R G+L I+G G GKSSLL G
Sbjct: 599 LRDIDFVARRGELCCIVGKVGMGKSSLLEACLG 631
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 31.9 bits (69), Expect = 0.100
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 9/151 (5%)
Frame = +2
Query: 263 RSGQLTAILGPSGAGKSSLLNILAGYRVNGSTGLISTNGLPRDLRQFR--KMSRYIMQ-- 430
R GQ+ ++G +G GKS+ L IL+G + ++ FR ++ + +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILSGKMKPNLGRYDNPPDWAEVVKYFRGSELQNFFTKVV 160
Query: 431 ED----LLQP-FITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLRLGKARNTATERL 595
ED L++P ++ + D + ++ L N L
Sbjct: 161 EDNIKALIKPQYVDHIPRAIKTGDKTVSGLIKARANNNNFEEVMDHTDLQNLLNREVGHL 220
Query: 596 SGGERKRLSIGLELLNNPPVIFLDEPTTGLD 688
SGGE +R +I V DEP++ LD
Sbjct: 221 SGGELQRFAIAAVATQKADVYMFDEPSSYLD 251
Score = 28.7 bits (61), Expect = 0.93
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 593 LSGGERKRLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLLKR 727
LSGGE +R++I L L V +DEP+ LD +++R
Sbjct: 456 LSGGELQRVAICLALGMPADVYLIDEPSAYLDSEQRIIASKVIRR 500
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2
Query: 278 TAILGPSGAGKSSLLNILAGYRVNGSTGLISTN 376
T+I+GP+GAGKS+L++ ++ S+ L STN
Sbjct: 28 TSIIGPNGAGKSNLMDAISFVLGVKSSHLRSTN 60
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +2
Query: 284 ILGPSGAGKSSLLNILAGYRVNGSTGLISTNGLPRDLRQFRKMSRYIMQEDLLQPFITVL 463
++GPSG+GKS+L+N L + S G + R + S+ +++E+ +Q + ++
Sbjct: 37 VVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYRQTTEIHVTSQ-VVRENRVQLQLNLI 95
Query: 464 E 466
+
Sbjct: 96 D 96
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 251 NGDFRSGQLTAILGPSGAGKSSLLNILAGYRVNGSTGLISTN 376
N + G ++GP GK+S+L IL Y + S I N
Sbjct: 100 NDESSYGPCVCLIGPRSCGKTSVLKILESYALKQSRHPICVN 141
>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 245 SLNGDFRSGQLTAILGPSGAGKS 313
+L+G GQLT I G SG+GKS
Sbjct: 85 TLHGGIPVGQLTEICGESGSGKS 107
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2
Query: 634 LQANR*SFSLPSRQSLGGCVPGFAESQQLNYFFHHNGFCLF 512
+ + R LPS L P + S L F HHN + +F
Sbjct: 224 MNSKRKKLELPSLPVLSTAGPSYTNSLALPPFHHHNNYKMF 264
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 257 DFRSGQLTAILGPSGAGKSSLLNILA 334
D +L I GPSG GKS+ + +LA
Sbjct: 101 DSLESRLLLICGPSGCGKSTAVQVLA 126
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Frame = +2
Query: 611 KRLSIGLELLNNPPV--IFLDEPTT 679
KR+S+G+ ++NPPV + D PT+
Sbjct: 125 KRVSLGIPSISNPPVDTVISDSPTS 149
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +2
Query: 269 GQLTAILGPSGAGKSSLLNIL---AGYRVNGSTGLISTNGLPR--DLRQFRKMSRYIMQE 433
G I+GP G+GKS L++ + A +N + ++ NG + D R++SR + E
Sbjct: 575 GNSVIIVGPRGSGKSVLVDDILSRAAQEINEKSYVVRLNGTYQTDDKLALREISRQLSIE 634
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -2
Query: 625 NR*SFSLPSRQSLGGCVPGFAESQQLNYFFHHNG 524
+R S+ P LGG G S L FHH G
Sbjct: 151 SRPSYVAPVAAGLGGLALGGLASHALGNLFHHRG 184
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 339 TGLTGRPA*SPPMDCLATFGNSGRCPGTSCRRIYCSPSSL 458
TG GRP SP + S + PG + + +PSSL
Sbjct: 315 TGNLGRPTKSPSVPTSVGSNKSRKFPGINGSTLTATPSSL 354
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 260 FRSGQLTAILGPSGAGKSSLLNILAG 337
+R G L + GP G+GK+S L LAG
Sbjct: 241 YRRGYL--LYGPPGSGKTSFLYALAG 264
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 401 IAEGREAVHWWRSGRSTR*PCIPLKY 324
++ G A HW+R GR + PLK+
Sbjct: 469 VSNGFSAEHWYRKGRIIKPGAQPLKH 494
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 542 IIQLLRLGKARNTATERLSGGERKRLSIGLELLNNPPVI 658
++Q RLGK ++T + + I ++ LNN VI
Sbjct: 423 VVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVI 461
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 272 QLTAILGPSGAGKSSLLNILA 334
Q+ + G G+GKS+LLN +A
Sbjct: 380 QVVTVTGEKGSGKSNLLNAVA 400
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +2
Query: 275 LTAILGPSGAGKSSLLNIL----AGYRVNGSTGLIS 370
+ A++GP G GKS+L+ L + Y ++ TG I+
Sbjct: 76 IVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPIT 111
>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 292
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 475 DGRRPEARVRGGERDKSRCGGRNN-SAVETRQSQEHSHRETVGRGE 609
DGRR + ER +R GR+N S E +S + E VG E
Sbjct: 220 DGRRDRILKQAEERRSNRAVGRSNLSGREYFESNKDKTHEVVGDEE 265
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 614 RLSIGLELLNNPPVIFLDEPTTGLDDVASSTCVSLLKRVAR 736
RL++ L N ++ LDEPTT LD+ + C SL K ++R
Sbjct: 1195 RLALAECLGVNCGILALDEPTTNLDE--ENIC-SLAKNLSR 1232
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +2
Query: 419 YIMQEDLLQPFITVLEAMSMAADLKLGSGXXXXXXXXXXXXIIQLLRLGKARN 577
YI+ ++LL+ F+T+ + + A G I + +LG RN
Sbjct: 2129 YILPQNLLRKFVTISDLRTQVAGYMYGKSPSDNPQIKEIRCIALVPQLGSIRN 2181
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +1
Query: 454 HCAGGNVDGRRPEARVRGGERDKSRCGGRNNSAVETRQSQEHSHRETVGRGEKTIIYWPG 633
H +++ ++P + + D + G NN+ + SQE SH T+ R E G
Sbjct: 57 HSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSH-WTI-RHESMPSALAG 114
Query: 634 AA*QPACNFPRRTHN 678
++ Q FP T N
Sbjct: 115 SSAQSMQQFPSITQN 129
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 284 ILGPSGAGKSSLLNIL 331
+LG SG+GKS+L+N L
Sbjct: 100 VLGESGSGKSTLVNTL 115
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 311 SSLLNILAGYRVNGSTGLISTNGLPRDLRQFRKMS 415
+SL + G++ NGS G IS L RDL ++ S
Sbjct: 256 TSLFYGVVGHQ-NGSNGFISPKNLTRDLLNYKANS 289
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,250
Number of Sequences: 5004
Number of extensions: 71027
Number of successful extensions: 302
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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