Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0001
         (746 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.25 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.25 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.00 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.0  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.0  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   7.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.3  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 571 GFAESQQLNYFFHHNGFCLFRHPGPELQVC 482
           GF  + Q N    HNG CL+  PG     C
Sbjct: 150 GFDGTYQTNVVVTHNGSCLYVPPGIFKSTC 179


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 571 GFAESQQLNYFFHHNGFCLFRHPGPELQVC 482
           GF  + Q N    HNG CL+  PG     C
Sbjct: 150 GFDGTYQTNVVVTHNGSCLYVPPGIFKSTC 179


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 571 GFAESQQLNYFFHHNGFCLFRHPGPELQVC 482
           GF  + Q +    HNG CL+  PG     C
Sbjct: 82  GFDGTYQTSVVVTHNGSCLYVPPGIFKSTC 111


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 393 RSRGSPLVEIRPVDPLTLYPAKIFSKEL 310
           R+ G PL   +PVDPL L  + I  KE+
Sbjct: 644 RAMGFPLD--KPVDPLLLVLSNIHVKEV 669


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 571 GFAESQQLNYFFHHNGFCLFRHPGPELQVC 482
           GF  + Q +    H+G CL+  PG     C
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFKSTC 111


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 571 GFAESQQLNYFFHHNGFCLFRHPGPELQVC 482
           GF  + Q +    H+G CL+  PG     C
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFKSTC 111


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 571 GFAESQQLNYFFHHNGFCLFRHPGPELQVC 482
           GF  + Q +    H+G CL+  PG     C
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFKSTC 111


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 571 GFAESQQLNYFFHHNGFCLFRHPGPELQVC 482
           GF  + Q +    H+G CL+  PG     C
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFKSTC 111


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 393 RSRGSPLVEIRPVDPLTLYPAKIFSKEL 310
           R+ G PL   +PVDPL L  + I  KE+
Sbjct: 644 RAMGFPLD--KPVDPLLLVLSNIHVKEV 669


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 571 GFAESQQLNYFFHHNGFCLFRHPG 500
           GF  + Q +    H+G CL+  PG
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPG 105


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = +3

Query: 672 PQRAWMMWLHQPVSPF 719
           P   W+ W++  ++PF
Sbjct: 342 PALTWLGWINSAINPF 357


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 571 GFAESQQLNYFFHHNGFCLFRHPGPELQVC 482
           GF  +   N    +NG CL+  PG     C
Sbjct: 119 GFDGTYPTNVVVKNNGTCLYVPPGIFKSTC 148


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 426 CRRIYCSPSSL 458
           C R+YCS +SL
Sbjct: 41  CERVYCSRNSL 51


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 392 GREAVHWWRSG 360
           G+  VHW+R G
Sbjct: 20  GKHTVHWFRKG 30


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 271 SAHSHPWSFRSWEKL 315
           S+H HPW  +S +++
Sbjct: 125 SSHEHPWFKKSVQRI 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,004
Number of Sequences: 438
Number of extensions: 5193
Number of successful extensions: 22
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)