Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0496
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun... 47 2e-06
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.1
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 27 2.8
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 27 3.7
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 4.9
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 26 6.5
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 26 6.5
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.6
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 8.6
>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 242
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Frame = +2
Query: 80 DDDDPVVQEIPVYLSRTLAKNLYIYQYPARPANRDWSDVQ---IVNAALKPKNQVVRLEV 250
++ DPVV+ PV+ S L NL + Q+P RP NR +SD ++ +KPK + ++V
Sbjct: 20 EEQDPVVRTYPVFFSPGLRNNLLLNQFPLRPKNRTYSDANGEAPIDVRVKPKTGWMEVDV 79
Query: 251 GLDT 262
+ T
Sbjct: 80 PIPT 83
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 668 FRKISLVLS*PHLFLDEQILRSPVVVQVHSLPLQDHQPCSFLVYVYLAYHDM 513
F+KIS +L+ +L LDE P ++ +H L ++H P L + Y M
Sbjct: 1132 FKKISTILARGYLALDEDESYLP-LLSIHLLISRNHDPYLMLNLILKHYLSM 1182
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.8
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Frame = +2
Query: 107 IPVYLSRTLAKNLYIYQYPARPANRDWSDVQIVNAALKPKNQVVRL----EVGLDTNSDK 274
+P LS+ + YP+ P N W Q V +A P R V + N D+
Sbjct: 87 VPSLLSQHRLQQPQPRLYPSAPLNYYWPSYQSVPSAAPPPPSQQRYMPDSAVAYNPNQDQ 146
Query: 275 FCSSVAEQIAIN 310
F +SV A N
Sbjct: 147 FGNSVNVSAACN 158
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 288 TEEQNLSLFVSRPTSSLTTWFLGLRAAFTICTSLQSLFAGLAG 160
T QNL L V SL+ +G R AF + +FA +AG
Sbjct: 124 TLSQNLGLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAG 166
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 26.2 bits (55), Expect = 4.9
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 1/110 (0%)
Frame = +2
Query: 218 KPKNQVVRLEVGLDTN-SDKFCSSVAEQIAINTDGHQESSWHVKEKDKSFYFKNRMMDKI 394
KPK + E L N ++ + +I + H K KD + + +
Sbjct: 45 KPKLNISPSESNLPNNVAENTTDTPVNYGSIRDENHNSR----KGKDVTLNSDEAHSENV 100
Query: 395 VYESSRPTVDTRHYAVAILEDKELHCTPLQGIIQMRPSYTYHDKQDKRKQ 544
S P V RH +D LQG R Y + + D+ KQ
Sbjct: 101 PSTSEDPDVVRRHLGGQAADDDNFSSLQLQGGDMHRQVYRWQQEVDQNKQ 150
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 482 QGIIQMRPSYTYHDKQDKRKQEKSKA 559
+GI ++P Y +DK K ++ KS++
Sbjct: 118 RGIRDLKPDYEKYDKDKKEEKSKSRS 143
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 146 YIYQYPARPANRDWSDVQIVN 208
Y YQYPA P D D+ +N
Sbjct: 306 YFYQYPAPPIGNDIFDLPTLN 326
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 58 DFNFNKDG*RRSRSARDTSLSIEDLSQESVHISVSS 165
DF+FN R R D +LS E+LS+ V +SS
Sbjct: 468 DFSFNVAQGARLRFVEDNTLSPEELSRTYVTNELSS 503
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 227 NQVVRLEVG-LDTNSDKFCSSVAEQIAINTDGHQESSWH 340
N+ V E G ++ S + SVAE + N G ++SSW+
Sbjct: 170 NKRVMYEEGWIEFESKRVAKSVAELLNTNQIGGKKSSWY 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,278
Number of Sequences: 5004
Number of extensions: 57363
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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