Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0496
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1013 + 10251463-10251858,10252366-10252434,10252545-102526...    37   0.015
11_06_0710 - 26492093-26493460                                         33   0.18 
09_02_0052 - 3616013-3616033,3616116-3616514,3617925-3618094,361...    31   0.96 
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118...    29   5.1  
12_01_1000 + 10138260-10138652,10138832-10139017,10139190-101394...    28   9.0  
10_08_0382 - 17408873-17409440,17410711-17410840,17410936-17411068     28   9.0  

>08_01_1013 +
           10251463-10251858,10252366-10252434,10252545-10252652,
           10253261-10253326,10254258-10254395,10255047-10255094,
           10256292-10256398,10257228-10257302,10258317-10258368,
           10258485-10259068,10259944-10260150,10260236-10260407
          Length = 673

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
 Frame = +2

Query: 80  DDDDPVVQEIPVYLS-RTLAKN--LYIYQYPARPANRDWSDVQIVNAALKPKNQVVRLEV 250
           D++D V++EI VY + +   ++  LY+ QYP RP  R + ++  +   ++ K    ++EV
Sbjct: 109 DEEDYVLREIDVYFTPKPFDEDTMLYVMQYPLRPCWRPY-ELNEICKEVRVKPLSSKVEV 167

Query: 251 GLDTNSDKFCSSVAEQIAINTDGHQESSWHVKEKDKSFYFKNRMMDKIVYESSRPTVDTR 430
            LD N++  C +   ++ +                      +R+ ++ +  SS    D  
Sbjct: 168 DLDINTE--CENYDPEVPL---------------------PSRLTEQTL--SSSKAADVA 202

Query: 431 HYAVAILEDKELHCTPLQGIIQMRPS 508
            YAV +L    +H   +  ++Q+RPS
Sbjct: 203 DYAVGVLRGNLVHLNHIDAVMQLRPS 228


>11_06_0710 - 26492093-26493460
          Length = 455

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 33/157 (21%), Positives = 65/157 (41%)
 Frame = +2

Query: 191 DVQIVNAALKPKNQVVRLEVGLDTNSDKFCSSVAEQIAINTDGHQESSWHVKEKDKSFYF 370
           D   VN + KPK+      + +D +  +   S+AE +   TD  ++ S   K+K K    
Sbjct: 86  DGAAVNESKKPKSSGGLTTLSVDDSQAEPADSIAEPVEDGTDDGEDES-EKKKKKKKKKS 144

Query: 371 KNRMMDKIVYESSRPTVDTRHYAVAILEDKELHCTPLQGIIQMRPSYTYHDKQDKRKQEK 550
           K++  D    ++ + +      +    +DK+          + +P     D+ DK+K +K
Sbjct: 145 KSKSSDDDDDDAEKKSKKKSKNSDDDEDDKKKS--------KKKPKNPDDDEDDKKKSKK 196

Query: 551 SKADDXXXXXXXXXXQQVTVKFARQETDVAKKAREKS 661
             +D+          ++   K + +E D   K + KS
Sbjct: 197 KSSDEDNDGAKKKKKKKSKGKSSDEEDDEKPKKKSKS 233


>09_02_0052 -
           3616013-3616033,3616116-3616514,3617925-3618094,
           3619691-3620732
          Length = 543

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
 Frame = +2

Query: 56  VILTLTKMDDDDPVVQEIPVYLSRTLAKNLYIYQYPARPANRDWSDVQIVNAALKPKNQV 235
           +I   +K++   PV+  I   +S     N  I     +PA    + +Q  N A+KP++Q+
Sbjct: 107 MIFGKSKLNLSMPVINPISKSVSNNAVLNGNIASLWPKPATAHGAYLQDGNTAVKPRSQL 166

Query: 236 VRLEVGLDTNS-DKFCS-------SVAEQIAINTDGHQESSWHVKEKDKSFYFKNRMM 385
           V L   ++ N   KF S       S+ E+I +   G  +    V    + FYF + ++
Sbjct: 167 VILCEEMNVNGLHKFISDNRKDLTSIREEIPVALRGATDPYGLVLASLEDFYFGDNLI 224


>02_01_0171 -
           1179095-1179388,1179668-1179801,1180036-1180900,
           1180998-1181258,1181424-1181621,1181752-1181982,
           1185337-1185648,1185750-1186247
          Length = 930

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/72 (31%), Positives = 34/72 (47%)
 Frame = +2

Query: 86  DDPVVQEIPVYLSRTLAKNLYIYQYPARPANRDWSDVQIVNAALKPKNQVVRLEVGLDTN 265
           DDP + E PV++ R  AK        A    R W  ++  + AL P++ V  L+  LD N
Sbjct: 788 DDPALDEDPVHIPRMDAK-------LAEDIVRKWQSIK--SKALGPEHSVASLQEVLDGN 838

Query: 266 SDKFCSSVAEQI 301
             K  +  A +I
Sbjct: 839 MLKVWTDRAAEI 850


>12_01_1000 +
           10138260-10138652,10138832-10139017,10139190-10139463,
           10139815-10140065
          Length = 367

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 237 TTWFLGLRAAFTICTSLQSLFAGLAGY 157
           + WFLG+   F ICT    L  G+AG+
Sbjct: 254 SNWFLGVE--FQICTDAVMLIPGIAGF 278


>10_08_0382 - 17408873-17409440,17410711-17410840,17410936-17411068
          Length = 276

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 248 VGLDTNSDKFCSSVAEQIAINTDG----HQESSWHVKEKDKSF 364
           V +DT+S   CS+V E    + DG     Q+ + H   K++SF
Sbjct: 156 VSVDTSSGVTCSTVTESSPSSADGDHRRQQQQTQHAAVKEESF 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,200,333
Number of Sequences: 37544
Number of extensions: 330022
Number of successful extensions: 761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)