Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0496
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082)                   57   2e-08
SB_33811| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_23841| Best HMM Match : LRR_1 (HMM E-Value=1e-09)                   30   2.3  
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_47879| Best HMM Match : ATP-synt_Eps (HMM E-Value=3.8)              29   5.2  
SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)                    28   6.9  
SB_33501| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_24486| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   6.9  
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     28   9.1  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   9.1  

>SB_36735| Best HMM Match : Sin_N (HMM E-Value=0.082)
          Length = 546

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = +2

Query: 380 MMDKIVYESSRPTVDTRHYAVAILEDKELHCTPLQGIIQMRPSYTYHDKQDKR-KQEKSK 556
           +MDK V  S +   D   YAVA+L++ ELH TPL+G++Q+RP+  Y DK +   KQ    
Sbjct: 3   LMDKQVLSSGQTPADASRYAVAVLKEGELHLTPLRGVLQLRPNLQYIDKVEAGVKQTAIG 62

Query: 557 ADD 565
            DD
Sbjct: 63  KDD 65



 Score = 31.5 bits (68), Expect = 0.74
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 602 VTVKFARQETDVAKKAREKSYETITQRVTAEPW 700
           VTV+ AR ETD AK  R  S++ + ++   E W
Sbjct: 235 VTVRMARPETDKAKLQRMSSFKYLEKKEAEEQW 267


>SB_33811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = +2

Query: 380 MMDKIVYESSRPTVDTRHYAVAILEDKELHCTPLQGIIQMRPSYTYHDKQDKR-KQEKSK 556
           +MDK V  S +   D   YAVA+L++ ELH TPL+G++Q+RP+  Y D+ +   KQ    
Sbjct: 3   LMDKQVLSSGQTPADASRYAVAVLKEGELHLTPLRGVLQLRPNLQYIDQVEAGVKQTAIG 62

Query: 557 ADD 565
            DD
Sbjct: 63  KDD 65


>SB_23841| Best HMM Match : LRR_1 (HMM E-Value=1e-09)
          Length = 391

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = +2

Query: 59  ILTLTKMDDDDPVVQEIPVYLSRTLAKNLYIYQYPARPANRDWSDVQIVNAALKPKNQVV 238
           +LTL   ++D  + +E  +Y+S+ L +N YI +      N        V+  L+  +++ 
Sbjct: 116 VLTLNISNND--IQEEGAIYISKMLTENFYITELDISNNNLQSQGAYAVSEMLRQNSEI- 172

Query: 239 RLEVGLDTNSDKFCSSVAEQI 301
            LEV L  N  KF     E I
Sbjct: 173 -LEVNLSEN--KFIEKDVEPI 190


>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2077

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 347 EKDKSFYFKNRMMDKIVYESSRPTVDTRHYAVAIL 451
           E D   Y +NRMM+KI Y+ + P +D R+  + ++
Sbjct: 770 EVDAPAYLRNRMMEKITYDFA-PILDKRYIIIHLV 803


>SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/90 (22%), Positives = 43/90 (47%)
 Frame = -1

Query: 584 HSLPLQDHQPCSFLVYVYLAYHDMCMTASFVLYLVKEYSVVLYPLISPQHSVECQLLVGC 405
           H   LQ    C F+ +V++    +   +SF++  ++ Y  V++  + P   +   +  G 
Sbjct: 258 HMTRLQRSHFCYFVGFVFIFGQGISAFSSFIV-TIERYLAVVF-CLQPDIRLFTPIAHGF 315

Query: 404 SHTLFYPSFYF*NKMIYLSLLHAMKIPDVH 315
              +F+ SF F   ++  ++L  + +PD H
Sbjct: 316 IAVIFFLSFVF--AILPFTVLKGIYVPDSH 343


>SB_47879| Best HMM Match : ATP-synt_Eps (HMM E-Value=3.8)
          Length = 267

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -1

Query: 731 SVLDSPKTHHTKALQSHVEL 672
           S+ D+ KT+ TKALQ+H+E+
Sbjct: 27  SIADATKTNSTKALQTHLEV 46


>SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)
          Length = 1082

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
 Frame = -3

Query: 498  ICIIPCKGVQCSSLSS----NIATA*CRVSTVGRLLSYTILSIILFLK*NDLSFSFTCHE 331
            +C++ C+  + S   S    N++ A C+ S       Y    +  F+   +LS  F   +
Sbjct: 914  LCVVMCRETRLSICQSTGRQNLSVAICQCSVQWL---YAFKRVCRFVSRQNLSTKFVSVD 970

Query: 330  DS*------CPSVFIAICSATEEQNLSLFVSRPTSSLTTWFLGLRAAFTICTS 190
             S       C    + IC + + QNLS+ +S+ +     W   ++    IC S
Sbjct: 971  LSVLCAVVICRKTRLPICQSKDRQNLSVAISQCS---VQWLFAVKRVCRICQS 1020


>SB_33501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +2

Query: 338 HVKEKDKSFYFKNRMMDKIVYESSRPTVDTRHYAVAILEDKELHCTPLQGIIQMRPSYTY 517
           H+  +  SF  ++  + K + +S       R  A   L  KE+     Q I   +PS+  
Sbjct: 8   HITPEQPSFVLEDGQIKKKMPKSKENVTFKRANAFLGLY-KEIMTKTRQHITPEQPSFVL 66

Query: 518 HDKQDKRKQEKSK 556
            D Q K+K  KSK
Sbjct: 67  EDGQIKKKMPKSK 79


>SB_24486| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 785

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = +2

Query: 191 DVQIVNAALKPKNQVVRLEVGLDTNSDKFCSSVAEQIAINTDGHQESS 334
           D + +NA ++ K ++ RLE+     ++   SSVA +IAIN   ++E+S
Sbjct: 100 DKETLNAQMEEKERLRRLELQKSLAAE---SSVAPKIAINQTKNEENS 144


>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 512 TYHDKQDKRKQEKSKADDXXXXXXXXXXQQVTV-KFARQETDVAKKAREKSYETITQRVT 688
           T   K D+ KQ+  + DD          +   + +    E   A KAR K Y   T +V 
Sbjct: 202 TLKKKDDQNKQDSKQLDDILDESTVKKVESEDMAQPVNDENSAAAKARAKKYPPKTGKVD 261

Query: 689 AE 694
           AE
Sbjct: 262 AE 263


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
          Length = 2022

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
 Frame = +2

Query: 245 EVGLDTNSDKFCSSVAEQIAIN--TDGHQE-SSWHVKEKDKSFYFKNR--MMDKIVYESS 409
           E G   N++  CS +A + A+N   D + + + W   E+ + +   +R  + D  + ++ 
Sbjct: 324 EDGTSRNNNSTCSRMATEFAVNEVVDCYSKLADWDEVERWQKYISNSRKCVQDGTIKQAL 383

Query: 410 RPTVDTRHY-AVAILEDKELHCTPLQGIIQMRPSYTYHDKQDKRKQ 544
           R   D  +  A++  EDK+     +Q  +Q+ PS   +   D  K+
Sbjct: 384 RLHADLNYIRALSKFEDKDF--PAVQNHLQLIPSTCLNSFTDSLKK 427


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 305  INTDGHQ-ESSWHVKEKDKSFYFKNRMMDKIVYESSRPTVDTRHYAVAILEDKE 463
            I+TD    E+  HVK K+K    K R  +K   E +R +  ++++  A  E K+
Sbjct: 871  IDTDSSDVETGRHVKRKEKKRKEKKRRREKDSSEKTRVSKSSKNFKAAESEKKK 924


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,919,630
Number of Sequences: 59808
Number of extensions: 411202
Number of successful extensions: 995
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)