Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0496
         (740 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3461|AAF51670.1|  486|Drosophila melanogaster CG10582-P...   159   5e-39
AF151390-1|AAF02535.1|  486|Drosophila melanogaster Sex-lethal i...   158   6e-39
BT021366-1|AAX33514.1|  522|Drosophila melanogaster LP10213p pro...   142   3e-34

>AE014296-3461|AAF51670.1|  486|Drosophila melanogaster CG10582-PA
           protein.
          Length = 486

 Score =  159 bits (385), Expect = 5e-39
 Identities = 84/213 (39%), Positives = 119/213 (55%), Gaps = 1/213 (0%)
 Frame = +2

Query: 80  DDDDPVVQEIPVYLSRTLAKNLYIYQYPARPANRDWSDVQIVNAALKPKNQVVRLEVGLD 259
           D+DDPVV+EIPV+LS+ L  +LY++QYP +    +  D  IVN  +KP  Q V+++ GLD
Sbjct: 3   DEDDPVVEEIPVFLSKNLRDSLYLFQYPTKTELPNHDDSVIVNCCVKPIAQEVKVDFGLD 62

Query: 260 TNSDKFCSSVAEQIAINTDGHQESSWHVKEKDKSFYFKNRMMDKIVYESSRPTVDTRHYA 439
             S  F     EQ A+  DG         +  +   +K  +MDK  + SSR   D   Y 
Sbjct: 63  IESAHFDRFKGEQFAVAADGKNTYGAVPPKGQERPTYKRGIMDKQAFTSSRSITDVAKYI 122

Query: 440 VAILEDKELHCTPLQGIIQMRPSYTYHDKQDKRKQEKSKADDXXXXXXXXXXQQVTVKFA 619
           V I  D+E+H +PL  I+QMRP  ++ DK DKRK+ + KA            QQVTVKFA
Sbjct: 123 VGIFTDREVHLSPLTSIVQMRPVLSHFDKDDKRKKAELKA-QTEDTDDDEVLQQVTVKFA 181

Query: 620 R-QETDVAKKAREKSYETITQRVTAEPWYDAFW 715
           R    +  K+ R  +Y++  QR+  EPW +A+W
Sbjct: 182 RGNAKNSGKEQRVGTYDSFVQRIADEPWCEAYW 214


>AF151390-1|AAF02535.1|  486|Drosophila melanogaster Sex-lethal
           interactor protein.
          Length = 486

 Score =  158 bits (384), Expect = 6e-39
 Identities = 84/213 (39%), Positives = 119/213 (55%), Gaps = 1/213 (0%)
 Frame = +2

Query: 80  DDDDPVVQEIPVYLSRTLAKNLYIYQYPARPANRDWSDVQIVNAALKPKNQVVRLEVGLD 259
           D+DDPVV+EIPV+LS+ L  +LY++QYP +    +  D  IVN  +KP  Q V+++ GLD
Sbjct: 3   DEDDPVVEEIPVFLSKNLRDSLYLFQYPTKTDLPNHDDSVIVNCCVKPIAQEVKVDFGLD 62

Query: 260 TNSDKFCSSVAEQIAINTDGHQESSWHVKEKDKSFYFKNRMMDKIVYESSRPTVDTRHYA 439
             S  F     EQ A+  DG         +  +   +K  +MDK  + SSR   D   Y 
Sbjct: 63  IESAHFDRFKGEQFAVAADGKNTYGAVPPKGQERPTYKRGIMDKQAFTSSRSITDVAKYI 122

Query: 440 VAILEDKELHCTPLQGIIQMRPSYTYHDKQDKRKQEKSKADDXXXXXXXXXXQQVTVKFA 619
           V I  D+E+H +PL  I+QMRP  ++ DK DKRK+ + KA            QQVTVKFA
Sbjct: 123 VGIFTDREVHLSPLTSIVQMRPVLSHFDKDDKRKKAELKA-QTEDTDDDEVLQQVTVKFA 181

Query: 620 R-QETDVAKKAREKSYETITQRVTAEPWYDAFW 715
           R    +  K+ R  +Y++  QR+  EPW +A+W
Sbjct: 182 RGNAKNSGKEQRVGTYDSFVQRIADEPWCEAYW 214


>BT021366-1|AAX33514.1|  522|Drosophila melanogaster LP10213p
           protein.
          Length = 522

 Score =  142 bits (345), Expect = 3e-34
 Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 1/205 (0%)
 Frame = +2

Query: 104 EIPVYLSRTLAKNLYIYQYPARPANRDWSDVQIVNAALKPKNQVVRLEVGLDTNSDKFCS 283
           +IPV+LS+ L  +LY++QYP +    +  D  IVN  +KP  Q V+++ GLD  S  F  
Sbjct: 47  QIPVFLSKNLRDSLYLFQYPTKTELPNHDDSVIVNCCVKPIAQEVKVDFGLDIESAHFDR 106

Query: 284 SVAEQIAINTDGHQESSWHVKEKDKSFYFKNRMMDKIVYESSRPTVDTRHYAVAILEDKE 463
              EQ A+  DG         +  +   +K  +MDK  + SSR   D   Y V I  D+E
Sbjct: 107 FKGEQFAVAADGKNTYGAVPPKGQERPTYKRGIMDKQAFTSSRSITDVAKYIVGIFTDRE 166

Query: 464 LHCTPLQGIIQMRPSYTYHDKQDKRKQEKSKADDXXXXXXXXXXQQVTVKFAR-QETDVA 640
           +H +PL  I+QMRP  ++ DK DKRK+ + KA            QQVTVKFAR    +  
Sbjct: 167 VHLSPLTSIVQMRPVLSHFDKDDKRKKAELKA-QTEDTDDDEVLQQVTVKFARGNAKNSG 225

Query: 641 KKAREKSYETITQRVTAEPWYDAFW 715
           K+ R  +Y++  QR+  EPW +A+W
Sbjct: 226 KEQRVGTYDSFVQRIADEPWCEAYW 250


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,709,907
Number of Sequences: 53049
Number of extensions: 588311
Number of successful extensions: 1561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)