Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0496
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20862-5|AAK29861.1|  483|Caenorhabditis elegans Hypothetical pr...    38   0.010
AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical ...    30   1.5  
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    29   2.6  
M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.        29   3.5  
AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dau...    29   3.5  
AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal daue...    29   3.5  
Z81484-8|CAE11295.1|  325|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    28   6.0  

>U20862-5|AAK29861.1|  483|Caenorhabditis elegans Hypothetical
           protein W06E11.1 protein.
          Length = 483

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 5/210 (2%)
 Frame = +2

Query: 86  DDPVVQEIPVYL-SRTLAKNLYIYQYPARPANRD-WSDVQIVNAALKPKNQVVRLEVGLD 259
           +D VV E  V + + T    ++   YP+  + RD W   +   A  K   +++ +    D
Sbjct: 34  EDQVVWECDVVVCNSTPNTEMFSVSYPS--SKRDAWDAKRFPIARYKKNVRLLEMRFMTD 91

Query: 260 TNSDKFCSSVAEQIAINTDGHQESSWHVKEKDKSFYFKNRMMDKIVYESSRPTVDTRHYA 439
           T    +    AE + +  DG      H  +  ++    + + +   +    P V+    A
Sbjct: 92  TQLGSYDKKKAELMYM--DGDVPKKGHGIDALRA---NDEIYEGRAFIHDHPIVN----A 142

Query: 440 VAILEDKELHCTPLQGIIQMRPSYTYHDKQDKRKQEKSKADDXXXXXXXXXXQQ---VTV 610
           +   ++ E    PL G  +M  S    +K+ K   +  K+D+               V V
Sbjct: 143 IGFFKNGEFFIHPLTGAFEMHRSIQGLNKKKKSDGKSGKSDEDSSGEEEDVKPSSAAVRV 202

Query: 611 KFARQETDVAKKAREKSYETITQRVTAEPW 700
           KF+R ET+  KK RE S     +++ ++ W
Sbjct: 203 KFSRPETERQKKRREASALHREKKIASDMW 232


>AL032657-8|CAB63370.1|  389|Caenorhabditis elegans Hypothetical
           protein Y47H9C.8 protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 596 QQVTVKFARQETDVAKKAREKSYETITQRVTAEP 697
           +Q+  KF +  TD   +ARE  Y T+T+ + A P
Sbjct: 294 EQLCSKFRQCVTDALNEAREMPYNTVTRELMAPP 327


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
 Frame = +2

Query: 242 LEVGLDTNSDKFCSSVAEQIAINTDGHQESSWH----VKEKDKS-----FYFKNRMM 385
           L + +DT+     S++A++ A   +G  E S+H    ++ KD+S     FY  NR++
Sbjct: 330 LRLRVDTSQKNLDSAIADRDAFKKEGKSEKSFHLNMGIETKDRSNNGIHFYINNRLI 386


>M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 341 VKEKDKSFYFKNRMMDKIVYESSRPTVDTRHYAV----AILEDKELHCT 475
           + E D+SFY      D   Y+S+RP+ +  H+      ++ ++ E H T
Sbjct: 78  LNETDRSFYENTCYTDGSCYQSARPSPEISHFGCMDEKSVTDETEFHDT 126


>AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform b protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 341 VKEKDKSFYFKNRMMDKIVYESSRPTVDTRHYAV----AILEDKELHCT 475
           + E D+SFY      D   Y+S+RP+ +  H+      ++ ++ E H T
Sbjct: 78  LNETDRSFYENTCYTDGSCYQSARPSPEISHFGCMDEKSVTDETEFHDT 126


>AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform a protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = +2

Query: 341 VKEKDKSFYFKNRMMDKIVYESSRPTVDTRHYAV----AILEDKELHCT 475
           + E D+SFY      D   Y+S+RP+ +  H+      ++ ++ E H T
Sbjct: 78  LNETDRSFYENTCYTDGSCYQSARPSPEISHFGCMDEKSVTDETEFHDT 126


>Z81484-8|CAE11295.1|  325|Caenorhabditis elegans Hypothetical
           protein C47A10.9 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 572 LQDHQPCSFLVYVYLAYHDMCMTASFVLYLVKEYSVVL 459
           +QDHQ  +  VYV +++H + ++   ++YL K Y  V+
Sbjct: 262 IQDHQAFNNFVYVVVSFHGV-LSTFIMVYLQKPYRDVV 298


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 74   KMDDDDPVVQEIPVYLSRTLAKNLYIYQYPARPANRDWSDVQIVN 208
            +++  DP+   I + + R  AKNL++      P  R W  +QI++
Sbjct: 1249 QLEGIDPLFDYITIEVMRAAAKNLHVSYIFNDPILRTWPGLQILD 1293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,261
Number of Sequences: 27780
Number of extensions: 318061
Number of successful extensions: 915
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)