Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0496
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 506 SYTYHDKQDKRKQEKSKADD 565
           +YTY   + K+K +K ++DD
Sbjct: 326 NYTYWGARAKKKSKKKESDD 345


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 384 WIK*CMRAADQQ-LTLDTMLWRY*RIKNYTVLL 479
           W+   ++A  ++ +T+D  LW++   K Y  ++
Sbjct: 58  WVLDKLKAERERGITIDIALWKFETAKYYVTII 90


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 44  LTFVVILTLTKMDDDDPVVQEIPVYLSRTLAKNLY 148
           + + +   L+ MD+ +    EIP+Y   TL   ++
Sbjct: 616 MRYKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVF 650


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 44  LTFVVILTLTKMDDDDPVVQEIPVYLSRTLAKNLY 148
           + + +   L+ MD+ +    EIP+Y   TL   ++
Sbjct: 616 MRYKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVF 650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,692
Number of Sequences: 438
Number of extensions: 4001
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)