Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0496
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49530.1 68418.m06130 SIN-like family protein low similarity ...    55   6e-08
At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR...    31   0.61 
At1g17030.1 68414.m02069 expressed protein                             30   1.9  
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po...    29   4.3  
At2g17590.1 68415.m02035 DC1 domain-containing protein contains ...    28   7.5  

>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
           Sex-lethal interactor [Drosophila melanogaster]
           GI:6049274; contains Pfam profile PF04801: Sin-like
           protein conserved region
          Length = 689

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
 Frame = +2

Query: 80  DDDDPVVQEIPVYLSRTLAKN--LYIYQYPARPANRDWS-DVQIVNAALKPKNQVVRLEV 250
           ++DD VV+EI V+   ++  N  LY+ QYP RP+ R +  D +     + P    V +++
Sbjct: 113 EEDDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDL 172

Query: 251 GLDTNSDKFCSSVAEQIAINTDGHQESSWHVKEKDKSFYFKNRMMDKIVYESSRPTVDTR 430
            +D +S  + S+    +   T    +++W                         PT+D  
Sbjct: 173 SMDVHSKNYDSNFGLNMTKQT---LKTTW----------------------KQPPTLD-- 205

Query: 431 HYAVAILEDKELHCTPLQGIIQMRPSYTYHDKQDKRKQEKS 553
            YAV +L   +LH  P+  + Q+RPS        K+KQE+S
Sbjct: 206 -YAVGVLSGDKLHLNPVHAVAQLRPSMQSLSSDKKKKQEES 245


>At5g45240.1 68418.m05552 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 812

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -1

Query: 653 LVLS*PHLFLDEQILRSPVVVQVHSLPLQDHQPCSFLVYVYLAYHDMCMTASFVLYLVKE 474
           L +S P + L +QILR    + V S P   + P + L Y  + +  +C+     +  +KE
Sbjct: 709 LTVSLPRISLSKQILRYKACIVVESRPGPVNDPPAELSYGDVQFEFLCLDHKKEIIKIKE 768

Query: 473 YSVVLYPLISPQHS 432
             + L  + S + S
Sbjct: 769 CGIQLMEVYSRKRS 782


>At1g17030.1 68414.m02069 expressed protein
          Length = 502

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 131 LAKNLYIYQYPA-RPANRDWSDVQIVNAALKPKNQVVRLEV 250
           L+++L+ YQ P  +P  R WS + +       KNQ+    V
Sbjct: 450 LSQSLFFYQDPGTKPVERHWSSIDLGTEIYMSKNQIAEWTV 490


>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
           potassium channel protein identical to SKOR [Arabidopsis
           thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
           6 transmembrane (1P/6TM) Shaker K+ channel family,
           PMID:11500563
          Length = 828

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
 Frame = +2

Query: 95  VVQEIPVYLSRTLAKNLYIYQYPARPANRDWSDVQIVNAALKPKNQV-----VRLEVGLD 259
           V+Q+IPV +   +A+ LY+      P  R  S   I    ++   +      V +E G  
Sbjct: 377 VLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGSV 436

Query: 260 TNSDKF-CSSVAEQIAINTDGHQESSWHVKEKDKSF 364
            +   F C  V E+I I  DG +E    V + D SF
Sbjct: 437 VDQLYFVCHGVLEEIGITKDGSEEIV-AVLQPDHSF 471


>At2g17590.1 68415.m02035 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 632

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 458 YPLISPQHSVECQLLVGCSHTLFYPSFY 375
           +PL  P H+ + +L  GC+HT    S+Y
Sbjct: 444 HPLFLPIHNYDTRLCNGCNHTGSTSSYY 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,414,553
Number of Sequences: 28952
Number of extensions: 285116
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)