Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0495
         (416 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   0.90 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   4.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   8.4  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 0.90
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 277 VHQTAIARNNPRKAVRS 327
           +HQT I  NNPR   R+
Sbjct: 46  IHQTVIYHNNPRDPNRA 62


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 303 VTGDGSLMHKHIF 265
           VTG+  +MH+H F
Sbjct: 3   VTGNLGIMHRHCF 15


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 213 MVQRQEWIWFHQQE*HQGRCVCASDCHR 296
           MVQ  + + FH  E  +   +C + CHR
Sbjct: 147 MVQAIQVLRFHLLELEKVHELCDNFCHR 174


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 295 ARNNPRKAVRSVGDGEAVEFAVVAGEKG 378
           A   P  AVR+ GD  A   A  A   G
Sbjct: 273 AERAPAPAVRAAGDAAAARGAARADGAG 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,205
Number of Sequences: 336
Number of extensions: 1215
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9174063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)