Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0495
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    24   8.2  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    24   8.2  

>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 251 GMTPRKMCLCIRLPSPVTTH 310
           G+TP+ + +  +LP PV +H
Sbjct: 268 GVTPQNVVMMSKLPEPVYSH 287


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 220 NVKSGYGFINRNDTKEDVFVHQTAIARNNPRK 315
           N K  Y + + ++  E +F   T I  NNP+K
Sbjct: 254 NDKENYNYPDFSNDNELLFSLATLIVENNPKK 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,398,245
Number of Sequences: 5004
Number of extensions: 20259
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)