Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0495
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 71 3e-13
02_01_0158 - 1103461-1104186 69 2e-12
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 2.6
08_01_0229 + 1834102-1834358,1834442-1834901 28 3.5
10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708 27 6.0
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 27 6.0
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 27 6.0
02_03_0120 + 15463163-15465250 27 6.0
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 27 8.0
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 27 8.0
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501 27 8.0
03_05_0433 - 24245560-24245946 27 8.0
>08_01_0202 - 1638978-1639571
Length = 197
Score = 71.3 bits (167), Expect = 3e-13
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +1
Query: 187 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 366
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 367 GEKG-FEAAGVTGPGG 411
G G +A VT PGG
Sbjct: 59 GNDGRTKAVDVTAPGG 74
>02_01_0158 - 1103461-1104186
Length = 241
Score = 68.5 bits (160), Expect = 2e-12
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +1
Query: 187 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 366
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 367 GEKG-FEAAGVTGPGG 411
E G +A VTGP G
Sbjct: 60 SEDGRTKAVDVTGPDG 75
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 402 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 274
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 3.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -3
Query: 84 GVIGERRWWQRW 49
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708
Length = 567
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +2
Query: 290 PSPVTTHVRLCARSA----TERRWSLPWLPGRKALKQLVLLVPVVS 415
P P T ++++ +++A T RWSL + + KQ++ ++PV++
Sbjct: 259 PLPYTPYLKILSKAAVKTSTTSRWSLSTVTQVEETKQILKMLPVLA 304
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 196 VSGTVKWFNVKSGYGFINRNDTKE 267
V+ VKW +KSG F N KE
Sbjct: 195 VAAAVKWLKIKSGQAFAVENYVKE 218
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 286 TAIARNNPRKAVRSVGDGEAVEFAVVAG 369
TAI N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>02_03_0120 + 15463163-15465250
Length = 695
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 289 AIARNNPRKAVRSVGDGEAVEFAVVA--GEKGFEAAGVTGPGG 411
++ R N AV S GEA VA KGF++ V G GG
Sbjct: 357 SVRRKNQEHAVASEDMGEATLSMEVARAATKGFDSGNVIGVGG 399
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 399 SNTSCFKAFLPGNHGKLHRLSVADRAHS 316
+NTS LPG+ GKLHRL + D ++
Sbjct: 109 ANTS-LTGTLPGDIGKLHRLELLDLGYN 135
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 287 LPSPVTTHVRLCARSATERRWSLPW 361
LP + H+R A +AT RWSL W
Sbjct: 35 LPPVLALHLRAAA-TATAARWSLAW 58
>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
Length = 506
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 69 RRWWQRW*NTPRPLLDVHRFSS 4
RRW W +TP L+D H SS
Sbjct: 81 RRWRPLWRSTPLVLVDAHLLSS 102
>03_05_0433 - 24245560-24245946
Length = 128
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 354 KLHRLSVADRAHSLTWVVTGDGS 286
++ RLS+ A + W +TGDGS
Sbjct: 55 EVQRLSLTSEADRIKWKLTGDGS 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,943,931
Number of Sequences: 37544
Number of extensions: 156488
Number of successful extensions: 463
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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