Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0495
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   54   5e-08
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            29   1.2  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  

>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 28/71 (39%), Positives = 43/71 (60%)
 Frame = +1

Query: 184 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 363
           ++ + +GTVKWFN + GYGFI    + +D+FVH  AI  +      +S+ +G+AV F   
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLFVHFKAIQSD----GFKSLKEGQAVTFVAT 66

Query: 364 AGEKGFEAAGV 396
            G+KG +A  V
Sbjct: 67  RGQKGMQAEEV 77


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 215 GSTSRVDMVSSTGMTPRKMCLCIRLPSPVTTHVRLCARSATERRWSLPWLPGRKALKQLV 394
           G++S +  VSST  +P +  +C  L  P    + LC    TE R  +P LP       L+
Sbjct: 440 GTSSSIWDVSSTPRSPTRTPVCYALMIPFGHMLSLC--MDTEGRLRVPLLPTHGFAYALL 497

Query: 395 LLVP 406
           +L P
Sbjct: 498 ILGP 501


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 187 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 282
           AEK  G V   ++K  +GFI R D   ++F H
Sbjct: 201 AEKYQGVVS--SMKESFGFIERADKVSEIFFH 230


>SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 184 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGD 336
           +A+  +    +  VKSGY   +  DTK +V   Q A     P+   R+ GD
Sbjct: 60  MADGYTAFFSFSRVKSGYSVFSGKDTKAEVPSLQAAQHLPEPKGRKRTTGD 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.132    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,707
Number of Sequences: 59808
Number of extensions: 175240
Number of successful extensions: 337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)