Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0495
(416 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 143 7e-35
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 143 7e-35
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 137 6e-33
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 56 1e-08
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 56 1e-08
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 56 1e-08
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 32 0.27
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 32 0.27
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 32 0.27
BT029686-1|ABL75743.1| 394|Drosophila melanogaster IP17383p pro... 27 10.0
AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U prot... 27 10.0
AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB... 27 10.0
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 143 bits (347), Expect = 7e-35
Identities = 67/78 (85%), Positives = 71/78 (91%)
Frame = +1
Query: 181 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 360
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 361 VAGEKGFEAAGVTGPGGE 414
V GEKG EAA VTGP GE
Sbjct: 117 VIGEKGNEAANVTGPSGE 134
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 143 bits (347), Expect = 7e-35
Identities = 67/78 (85%), Positives = 71/78 (91%)
Frame = +1
Query: 181 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 360
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116
Query: 361 VAGEKGFEAAGVTGPGGE 414
V GEKG EAA VTGP GE
Sbjct: 117 VIGEKGNEAANVTGPSGE 134
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 137 bits (331), Expect = 6e-33
Identities = 66/78 (84%), Positives = 70/78 (89%)
Frame = +1
Query: 181 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 360
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIA NNP+KAVRSVGDGE VEF V
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDV 116
Query: 361 VAGEKGFEAAGVTGPGGE 414
V GEKG EAA VTGP GE
Sbjct: 117 VIGEKGNEAANVTGPSGE 134
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/70 (41%), Positives = 39/70 (55%)
Frame = +1
Query: 202 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 381
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 382 EAAGVTGPGG 411
EA V+ G
Sbjct: 97 EATRVSSRHG 106
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/70 (41%), Positives = 39/70 (55%)
Frame = +1
Query: 202 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 381
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 382 EAAGVTGPGG 411
EA V+ G
Sbjct: 97 EATRVSSRHG 106
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/70 (41%), Positives = 39/70 (55%)
Frame = +1
Query: 202 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 381
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 382 EAAGVTGPGG 411
EA V+ G
Sbjct: 97 EATRVSSRHG 106
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 196 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 294
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 196 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 294
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 196 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 294
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>BT029686-1|ABL75743.1| 394|Drosophila melanogaster IP17383p
protein.
Length = 394
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 233 PLLTLNHFTVPDTFSAM 183
P+LT+N +PDTF +M
Sbjct: 91 PILTINSLAIPDTFCSM 107
>AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U protein
protein.
Length = 1910
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 233 PLLTLNHFTVPDTFSAM 183
P+LT+N +PDTF +M
Sbjct: 217 PILTINSLAIPDTFCSM 233
>AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB,
isoform B protein.
Length = 2196
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 233 PLLTLNHFTVPDTFSAM 183
P+LT+N +PDTF +M
Sbjct: 503 PILTINSLAIPDTFCSM 519
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,005,141
Number of Sequences: 53049
Number of extensions: 249039
Number of successful extensions: 511
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1251032760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -