Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0495
(416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 118 2e-27
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 83 8e-17
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 78 2e-15
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 77 7e-15
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 77 7e-15
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 52 1e-07
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 52 1e-07
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 52 1e-07
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 52 1e-07
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme... 26 9.5
U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical pr... 26 9.5
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 26 9.5
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 118 bits (284), Expect = 2e-27
Identities = 54/77 (70%), Positives = 59/77 (76%)
Frame = +1
Query: 181 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 360
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 361 VAGEKGFEAAGVTGPGG 411
V G KG EAA VTGP G
Sbjct: 76 VEGSKGLEAASVTGPDG 92
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 83.0 bits (196), Expect = 8e-17
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +1
Query: 184 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 360
I + G VKW++V YGFI+RND ++D+FVHQTAIA++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 361 VAGEKGFEAAGVTGPGGE 414
V G+ G EAA VTGP G+
Sbjct: 122 VEGKNGPEAANVTGPNGD 139
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 78.2 bits (184), Expect = 2e-15
Identities = 38/78 (48%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +1
Query: 181 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 357
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI++++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 358 VVAGEKGFEAAGVTGPGG 411
+V G+ G EAA VTGP G
Sbjct: 119 LVDGKNGPEAANVTGPAG 136
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 76.6 bits (180), Expect = 7e-15
Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Frame = +1
Query: 181 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 348
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 349 EFAVVAGEKGFEAAGVTGPGGE 414
F +V G KG EAA VTGP GE
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGE 165
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 76.6 bits (180), Expect = 7e-15
Identities = 42/82 (51%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Frame = +1
Query: 181 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 348
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 349 EFAVVAGEKGFEAAGVTGPGGE 414
F +V G KG EAA VTGP GE
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGE 165
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +1
Query: 202 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 375
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 376 GFEAAGVTG 402
G EA V+G
Sbjct: 80 GREAYAVSG 88
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +1
Query: 202 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 375
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 376 GFEAAGVTG 402
G EA V+G
Sbjct: 111 GREAYAVSG 119
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +1
Query: 202 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 375
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 376 GFEAAGVTG 402
G EA V+G
Sbjct: 111 GREAYAVSG 119
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 52.4 bits (120), Expect = 1e-07
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +1
Query: 202 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 375
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 376 GFEAAGVTG 402
G EA V+G
Sbjct: 111 GREAYAVSG 119
>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
protein 1 protein.
Length = 1425
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 411 TTGTSNTSCFKAFLPGNHGKLHRLSVADR 325
T+ ++N S K+ +PGN KLH + V D+
Sbjct: 43 TSSSTNGSFEKSAIPGNARKLHVVIVIDQ 71
>U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical
protein K09E2.2 protein.
Length = 596
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 268 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 375
D+FV + + RK V G +E A+ +GEK
Sbjct: 216 DIFVENKLVTKKKLRKKVVKKGLTNTIELALKSGEK 251
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 247 NRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 375
NRN K +F+ +I N PR +GDG E ++ EK
Sbjct: 131 NRNTMKAGIFIIIFSIVFNFPRFFDYKIGDGYLSEMWMLDTEK 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,976,375
Number of Sequences: 27780
Number of extensions: 122132
Number of successful extensions: 239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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