Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0495
(416 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 64 4e-11
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 56 1e-08
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 56 1e-08
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 55 2e-08
At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ... 27 3.8
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin... 27 3.8
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 27 3.8
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to... 26 8.9
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 64.1 bits (149), Expect = 4e-11
Identities = 33/76 (43%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +1
Query: 187 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 366
A + +G V WFN GYGFI +D ++FVHQ++I + RS+ G+AVEFA+
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQ 63
Query: 367 GEKG-FEAAGVTGPGG 411
G G +A VT PGG
Sbjct: 64 GSDGKTKAVNVTAPGG 79
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 56.0 bits (129), Expect = 1e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +1
Query: 187 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 366
A + G V WF+ GYGFI +D E++FVHQ++I + RS+ GE+VE+ +
Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSD----GFRSLTLGESVEYEIAL 63
Query: 367 GEKG-FEAAGVTGPGG 411
G G +A VT PGG
Sbjct: 64 GSDGKTKAIEVTAPGG 79
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 55.6 bits (128), Expect = 1e-08
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +1
Query: 190 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 369
++ GTVKWF+ + G+GFI +D +D+FVHQ++I + RS+ E+VEF V
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVD 68
Query: 370 EKGF-EAAGVTGPGG 411
G +A V+GP G
Sbjct: 69 NSGRPKAIEVSGPDG 83
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 55.2 bits (127), Expect = 2e-08
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = +1
Query: 190 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VA 366
E+ G+VKWF+ + G+GFI +D +D+FVHQ++I + RS+ EAVEF V +
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEID 64
Query: 367 GEKGFEAAGVTGPGG 411
+A V+GP G
Sbjct: 65 NNNRPKAIDVSGPDG 79
>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 294
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 293 SPVTTHVRLCARSATERRWSLPWL 364
+PV T VR+C + +TE SLP++
Sbjct: 26 APVPTFVRICKKKSTEGFQSLPYV 49
>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
[Equus caballus] GI:5052355; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 579
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 75 GERRWWQRW*NTPRPLLDV 19
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
T2a [Homo sapiens] GI:2981198; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 541
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 75 GERRWWQRW*NTPRPLLDV 19
GE+ WWQ + TPR L DV
Sbjct: 241 GEKVWWQEFDVTPRQLEDV 259
>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
glutamine synthetase, chloroplast precursor (glutamate--
ammonia ligase, GS2) [Arabidopsis thaliana]
SWISS-PROT:Q43127
Length = 430
Score = 26.2 bits (55), Expect = 8.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 190 EKVSGTVKWFNVKSGYGFINRN 255
+KVSG V WF ++ Y + +N
Sbjct: 175 KKVSGEVPWFGIEQEYTLLQQN 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,672,034
Number of Sequences: 28952
Number of extensions: 116723
Number of successful extensions: 269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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