Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0493
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       30   0.30 
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    28   1.2  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    28   1.6  
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M...    26   4.9  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.9  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   6.5  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   6.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.6  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    25   8.6  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   8.6  

>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 516 ATLFILTTLWINTYPFLDEDSAVYELIPNPKWFLLFCAVWGLFFIGGLMSFTLYHIYP 689
           AT++ +    INTYP ++E   VY  +PN  +F +  A + +  +G   S      YP
Sbjct: 231 ATMYKMADTIINTYPAINE---VYYALPNKHYFEINLAPFNIDNLGSNCSLYQPQAYP 285


>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 501 ILISTATLFILTTLWINTYPFLDEDSAVYELIPNPKWFL---LFCAVWGLFFIGGLMSFT 671
           + ISTA  F+  T+W+   PF+D  +   +L  + +W +   +   ++G+  IG  +S  
Sbjct: 3   VYISTAA-FLYYTIWVLIMPFVDNMNISQKLFLDREWAITIPVAVMLFGICLIGTFVSLL 61

Query: 672 L 674
           +
Sbjct: 62  M 62


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 227 NKVDQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEV 352
           NK+D  + ++L    P   PN + +I+Q +K    L EN  +
Sbjct: 116 NKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMI 157


>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 248 KKLLVLSEPAADPN------IVEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQD 409
           +KLL  +  +AD N       ++   +R K+ + LL     K   ++ +L PEE +  Q+
Sbjct: 35  RKLLEEANSSADENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQN 94

Query: 410 F 412
           F
Sbjct: 95  F 95


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 492 PQLHQECPYTYIF*YNYVIQLQNNSF 415
           P +    PYT++  Y Y   + NNS+
Sbjct: 450 PAIPPNVPYTFVDPYTYACYINNNSY 475


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 236 DQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLL 337
           D N+K+     E ++  N+ E +++R KK  P+L
Sbjct: 385 DHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPIL 418


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 354  KKVKKNPSFSLKKNNHFKTLKKNCFVAELHNYIKKYMYMDIPDAVVGKFILISTA 518
            +K  + P F   K    K   +   V+  H   K+ +Y+ I    VGKFIL +T+
Sbjct: 1383 RKSGRVPRFGSFKYPALKLYDRGVLVSISHMPQKEKLYITISADEVGKFILEATS 1437


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +3

Query: 405 KTLKKNCFVAELHNYIKKYMYMDIPDAVVGKFILISTATLFILTTLWINTY 557
           +TL  + F ++L+  +   +++ + ++    F  +S  +L +LT LWI  +
Sbjct: 598 QTLTDSVFSSKLYKLVIFVVFLSLVNSGPFIFRALSKKSLAVLTMLWITLF 648


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +3

Query: 369 NPSFSLKKNNHFKTLKKNCFVAELHNYIKKYMYMDIPDAVVGKFILISTATLFILTTLWI 548
           NP++ L   NHF        + +L  Y  K   +   +      +L +  T     TLW 
Sbjct: 328 NPTW-LSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENT----LLWNHITPTSPDTLWC 382

Query: 549 NTYPFLDEDSAVYELIPN 602
             YPF D+D+ V E +P+
Sbjct: 383 --YPFTDKDTFVMEEMPD 398


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 132 KSVVRNVRGLQVKQFLIHTKVEVKKRT--TQLMIIK 233
           K +VRN   + ++ ++ H K+++ K T  +++ I+K
Sbjct: 286 KLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILK 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,493
Number of Sequences: 5004
Number of extensions: 61585
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)