Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0493
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0127 - 926333-926359,926637-926708,926928-927032,927129-92... 33 0.18
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 30 1.7
09_06_0214 + 21616019-21616086,21616205-21616252,21616336-216164... 30 2.2
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234... 30 2.2
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177... 29 2.9
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 29 3.9
07_03_0230 + 15526504-15526673,15526809-15526867,15527135-155271... 28 9.0
>02_01_0127 -
926333-926359,926637-926708,926928-927032,927129-927227,
927298-927381,927462-927518,927596-927671,927755-927807,
927899-927931,928100-928165,928556-928628,928721-928794,
929177-929237,929354-929536,929656-929703,929810-929868
Length = 389
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 474 IPDAVVGKFILISTATLFILTTLWINTYP---FLDEDSAVYELIPNPK 608
+PDA V +F I +F LW+N ++ D+ E+IPNPK
Sbjct: 195 VPDAHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 242
>11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 655 PPMKNSPQTAQNSRNHFGFGINS*TAESSSKNGYVFIQRVVKINRVAVEI 506
P K P+T QN R F + + SKN + +I +VKI+ +A I
Sbjct: 1096 PCFKGGPRTIQNLRKRFHLSLTEEELLAPSKNQFAYI--IVKISGIAQAI 1143
>09_06_0214 +
21616019-21616086,21616205-21616252,21616336-21616427,
21616555-21616645,21617660-21617720,21617810-21617887,
21617979-21618029,21618118-21618191,21618306-21618378,
21618762-21618819,21618899-21618969,21619045-21619110,
21619327-21619359,21619445-21619497,21619572-21619647,
21619729-21619785,21619874-21619957,21620037-21620135,
21620260-21620364,21620575-21620643,21621019-21621108
Length = 498
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 474 IPDAVVGKFILISTATLFILTTLWINTYP---FLDEDSAVYELIPNPK 608
+PD V +F I +F LW+N ++ ++ E+IPNPK
Sbjct: 284 VPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAEALKMEIIPNPK 331
>04_04_0919 -
29422003-29422267,29422411-29422660,29423163-29423481,
29423625-29424794,29424879-29425388,29425449-29425607
Length = 890
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -3
Query: 363 LPFFTSVFSSKGFCFLALCIIFSTILGSA 277
LP TS F K FC + +IF T+ GSA
Sbjct: 534 LPATTSPFKIKKFCLRSASLIFCTVSGSA 562
>02_05_0419 -
28814754-28816114,28816749-28817435,28817554-28817774,
28818536-28818750
Length = 827
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 308 QRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQD 409
+++KK+K + ++++KK E+ +L K++FQD
Sbjct: 162 KKSKKRKGITASSDIKKEAEQYVLHAGSKRNFQD 195
>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 305 IQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKE 421
+QR K+Q L E +K KE S E K+ + FEKE
Sbjct: 1097 VQRLKEQGSLRTEREREKDKEASRRLEETKERDKKFEKE 1135
>07_03_0230 +
15526504-15526673,15526809-15526867,15527135-15527139,
15528165-15528268,15528362-15528437,15528646-15528704,
15528803-15528868,15529372-15529455,15529608-15529672,
15529758-15529840,15529949-15530039,15530142-15530194,
15530285-15530428,15530562-15530675
Length = 390
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 640 SPQTAQNSRNHFGFGINS*TAESSSKNGYV 551
+PQ NS NHFG IN T S+ GY+
Sbjct: 53 TPQMGWNSWNHFGCNINENTIR-STVGGYI 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,406,635
Number of Sequences: 37544
Number of extensions: 327313
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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