Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0493
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 649 MKNSPQTAQNSRNHFGFGINS*TAESSSKNGYVF 548
           +KN     Q    HFG   NS     ++KNG  F
Sbjct: 216 IKNFDNCDQRINYHFGMTDNSRLEPGTNKNGKFF 249


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 554 IPIFG*RFCCL*IDPKSKVVSTIL 625
           +P+ G  F C+     S VVSTIL
Sbjct: 291 VPLLGTYFNCIMFMVASSVVSTIL 314


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 132 FSLLCSSGSTNSNACLIKAEDIF*D 58
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 132 FSLLCSSGSTNSNACLIKAEDIF*D 58
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 132 FSLLCSSGSTNSNACLIKAEDIF*D 58
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 132 FSLLCSSGSTNSNACLIKAEDIF*D 58
           F++LC      +   L++AEDIF D
Sbjct: 33  FTILCILTLALTLVTLVRAEDIFED 57


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 339 RTQK*KKVKKNPSFSLKKNNHFKTLKKNCFVAELHNYIKKYMY 467
           R+++ K +    + ++  NN++K    N +    +NY KK  Y
Sbjct: 75  RSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYY 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,169
Number of Sequences: 438
Number of extensions: 4517
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)