Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0492
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   190   1e-49
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   189   2e-49
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   2.9  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    25   6.6  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   8.7  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.7  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  190 bits (462), Expect = 1e-49
 Identities = 90/151 (59%), Positives = 103/151 (68%)
 Frame = +2

Query: 59  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 238
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 239 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 418
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 419 XXXXXXXXXXXXXXXXXXXXRGHIIEKIPEL 511
                               RGH IE+IPE+
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEV 150


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  189 bits (460), Expect = 2e-49
 Identities = 89/151 (58%), Positives = 103/151 (68%)
 Frame = +2

Query: 59  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 238
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++AG
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 239 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 418
           HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 419 XXXXXXXXXXXXXXXXXXXXRGHIIEKIPEL 511
                               RGH IE+IPE+
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEV 150


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 120 APCTVSLFSEYTDTKGRATDRLISLL 43
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = -3

Query: 77  KVG-LPIDSFRYFSEAIPLKY-TLIAV 3
           K+G LP+ SF Y +  +PL Y TL+AV
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAV 212


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 58  SIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGP 168
           SI SP+ SVG   +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 454 GXSNGCRQGRSPLSEVDATVPTPPGL 377
           G +NG     +P  E+   +P PP L
Sbjct: 220 GFNNGTMSQYTPAGEIKLRIPRPPSL 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,825,818
Number of Sequences: 5004
Number of extensions: 33474
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)