Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0492
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 171 2e-43
07_01_0578 + 4295386-4296489,4297394-4297507 171 3e-43
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.076
03_05_0366 - 23505755-23506441 31 0.54
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 0.94
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 1.2
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 30 1.2
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 29 1.6
04_01_0588 + 7657510-7657992,7658397-7658843 29 2.9
02_04_0457 + 23093020-23093343,23093798-23093806 29 2.9
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 5.0
05_03_0419 - 13707843-13707860,13707936-13708010,13708251-137082... 28 5.0
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 5.0
12_02_0488 + 19587337-19587648,19587739-19587798,19587876-195879... 27 6.6
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 27 6.6
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 6.6
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312 27 6.6
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 27 8.8
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 8.8
02_03_0152 - 15767985-15768317 27 8.8
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 171 bits (417), Expect = 2e-43
Identities = 85/150 (56%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Frame = +2
Query: 62 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 238
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 239 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 418
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 419 XXXXXXXXXXXXXXXXXXXXRGHIIEKIPE 508
RGH IE +PE
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPE 152
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 171 bits (416), Expect = 3e-43
Identities = 84/149 (56%), Positives = 98/149 (65%), Gaps = 2/149 (1%)
Frame = +2
Query: 71 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 244
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 245 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 424
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 425 XXXXXXXXXXXXXXXXXXRGHIIEKIPEL 511
RGH IE +PEL
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPEL 154
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.076
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 251 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 361
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.54
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 137 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 313
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 314 HRSGQGA 334
+ + + A
Sbjct: 168 NDNDEEA 174
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 30.3 bits (65), Expect = 0.94
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +1
Query: 34 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 189
ASL N + P+F V G SQA V + GAH G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 356 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 249
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = -3
Query: 329 PDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 228
P + +HHHGH + Q H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = -3
Query: 326 DRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 228
D +HHH H G H Q QH PP
Sbjct: 32 DPQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPP 64
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 34 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 189
ASL N I +PTF +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 173 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 343
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 344 MCRGGRMFAPTKPWRRW 394
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 236 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 340
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 377 SWGRTYVHHDTCYRRHPDRTYEYHH 303
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>05_03_0419 -
13707843-13707860,13707936-13708010,13708251-13708286,
13709718-13709765,13710246-13710326,13710503-13710554,
13710671-13710730,13711266-13711346,13711461-13711577,
13711714-13711754,13711981-13712059,13712136-13712292,
13712586-13712718,13712799-13712926,13715152-13715314
Length = 422
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 253 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVRTD-GRLEHEREGLG 122
+TG+ +L+ + VG+P+VL ++ I Q+ D G +E +RE G
Sbjct: 204 ATGVYKTLVRYLVGVPQVL----LDFIRQINDDNGPMEEQRERYG 244
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 320 TYEYHH-HGHAEFGRQHVQYPMIQH 249
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
>12_02_0488 +
19587337-19587648,19587739-19587798,19587876-19587941,
19588017-19588082,19588253-19588345
Length = 198
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 146 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 259
K ++ D N++ + SK R VSK H SAES
Sbjct: 80 KRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAES 117
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 140 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRA---VARIPRVRGGG 310
VF PIR D+V+ V +K + ++ +Q GTGRA R P+ RGG
Sbjct: 160 VFDVPIRKDIVHRVGTHSTKTISEVSGTGRKPYNQK-----GTGRARHGTLRGPQFRGGA 214
Query: 311 T 313
T
Sbjct: 215 T 215
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +2
Query: 230 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFAPTKP-WR 388
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
Length = 133
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 292 RNSGDSTSSTP*FSTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 164
R+SG T F+ L + H +G+ VLG +N+ ++DQ+
Sbjct: 87 RDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 34 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRF 189
ASL N I +PT +G + G S + + GAH G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 125 WLHPAPSHSSLN-TPTLKVGLPIDSF 51
WL P P+H ++N L + +P+D F
Sbjct: 871 WLKPTPAHVAMNPAEALAMQIPVDHF 896
>02_03_0152 - 15767985-15768317
Length = 110
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Frame = -3
Query: 341 YRRHPDRTYEYHHHGHAEFGRQ----HVQYPMI-QHWFGDQPP 228
YR P HG AEF RQ H +P HW +PP
Sbjct: 19 YRYRPSPMLPELSHGVAEFSRQSTRRHAPWPPSGGHWSSSEPP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,379
Number of Sequences: 37544
Number of extensions: 297614
Number of successful extensions: 1154
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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