Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0488
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664...   232   2e-61
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548...   218   4e-57
08_02_0707 - 20212190-20214592                                         31   0.69 
11_04_0414 + 17386806-17387936                                         29   3.7  
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272...    29   3.7  
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549...    28   8.5  

>03_02_0235 +
           6644083-6644125,6645218-6645315,6645448-6645498,
           6645573-6645686,6645771-6645971,6646047-6646148,
           6647245-6647352,6647745-6647995,6648108-6648279,
           6648341-6648397,6648555-6648710,6648807-6648857,
           6649053-6649193,6649270-6649464,6649534-6649665,
           6649768-6649941,6650396-6650635,6650761-6650955
          Length = 826

 Score =  232 bits (567), Expect = 2e-61
 Identities = 117/229 (51%), Positives = 148/229 (64%)
 Frame = +2

Query: 29  QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 208
           Q  MK   D ++ + + F  ++K  +LQEAR F+   +  RKC  ++TK+LYLLNQGE  
Sbjct: 3   QPYMKKDDDDEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETF 62

Query: 209 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYR 388
           T  EAT++FFA TKLFQSKD  LRRLVYL IKELSP + +VIIVTSSL KDM  K D YR
Sbjct: 63  TKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYR 122

Query: 389 PAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLVRRWINEA 568
             AIR LC I D T+L  IERY+KQAIVDKNP                 P++V+RW NE 
Sbjct: 123 ANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQANPEIVKRWSNEV 182

Query: 569 QEAMTSDHVMVSYHALAVVAGARRNDRLSTVKLITKLARTPVRSPYTLC 715
           QEA+ S   +V +H LA++   R+NDRL+  K+++ L R  VRSP   C
Sbjct: 183 QEAVQSRFALVQFHGLALLHQIRQNDRLAISKMVSGLTRGSVRSPLAQC 231


>07_01_0718 +
           5484553-5484601,5484836-5484933,5485028-5485078,
           5485744-5485857,5485887-5485937,5485938-5486138,
           5486240-5486341,5486879-5486986,5487053-5487286,
           5488250-5488500,5488592-5488763,5489165-5489320,
           5489405-5489455,5489499-5489591,5489814-5490014,
           5490105-5490236,5490308-5490481,5490755-5490994,
           5491213-5491407
          Length = 890

 Score =  218 bits (532), Expect = 4e-57
 Identities = 118/236 (50%), Positives = 147/236 (62%), Gaps = 17/236 (7%)
 Frame = +2

Query: 59  KEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFF 238
           +EE  + F  ++K  +LQEAR F+   +  R+C  ++TK+LYLLNQG+  T  EAT++FF
Sbjct: 15  EEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFF 74

Query: 239 ATTKLFQSKDVVLRRLVYLCIKELSPMAQD-----------------VIIVTSSLTKDMT 367
           ATTKLFQSKD  LRR+VYL IKELSP A +                 VIIVTSSL KDM 
Sbjct: 75  ATTKLFQSKDAGLRRMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLMKDMN 134

Query: 368 GKDDEYRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLV 547
            K D YR  AIR LC I DST+L  IERY+KQAIVDKNP                 P++V
Sbjct: 135 SKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVV 194

Query: 548 RRWINEAQEAMTSDHVMVSYHALAVVAGARRNDRLSTVKLITKLARTPVRSPYTLC 715
           +RW NE QEA+ S   +V +HALA++   R+NDRL+  KL+T L R  VRSP   C
Sbjct: 195 KRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQC 250


>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = -3

Query: 517 QSGDQCGRSYCRILINNSLFHVPLNSLQHCTVCDATQSSNGGRSVLIVFTRHVLRK*RSH 338
           QSGD   +    I  + ++  +PLNS+   T C    S NGG   L     H   + R H
Sbjct: 599 QSGDHAHQDISNISSDPAILEIPLNSIH--THCSEAHSCNGG---LQSSENHNKSRNRHH 653

Query: 337 NDH 329
            DH
Sbjct: 654 IDH 656


>11_04_0414 + 17386806-17387936
          Length = 376

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 281 RLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSI 418
           R+VY+C           +   S++ K +T   DE+ PAA  A  SI
Sbjct: 183 RIVYVCRDPKDAFVSMWLFTMSNMVKGVTTTTDEHHPAAAAAAPSI 228


>01_06_1795 -
           39925019-39926029,39926265-39926408,39927200-39927277,
           39927722-39927838,39927925-39927981,39928492-39928623,
           39928725-39928922,39929364-39929474,39929570-39929785,
           39929879-39930064,39930590-39931192
          Length = 950

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
 Frame = +2

Query: 29  QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 208
           +SI +AR    EED  + + LD        R      V  RK   +L +++Y      E+
Sbjct: 30  KSIGEARSKA-EEDRIISRELDHLK-----RRLADPDVPRRKMKELLLRLVYA-----EM 78

Query: 209 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD-VIIVTSSLTKDMTGKDDEY 385
              +A+       K+   + + L+R  YL +        D VI+V +++ KD+   +   
Sbjct: 79  LGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLV 138

Query: 386 RPAAIRALCSITDSTMLQAI 445
             AA+ A C +     + A+
Sbjct: 139 VCAALTAACRLIGEEAIPAV 158


>06_03_1359 +
           29554078-29554375,29554470-29554655,29554768-29554923,
           29555557-29555694,29555789-29555909,29556339-29556345
          Length = 301

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 460 FHVPLNSLQHCT--VCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHI 326
           FHV     +HC   + + ++SS GG+S + +F+RH  R   S +  +
Sbjct: 122 FHV---CTEHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSV 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,643,777
Number of Sequences: 37544
Number of extensions: 408369
Number of successful extensions: 1110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)