Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0488
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.) 215 2e-56
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36) 29 2.8
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8) 29 2.8
SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32) 29 3.8
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_27592| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-39) 28 8.7
SB_11945| Best HMM Match : EURL (HMM E-Value=9.7) 28 8.7
>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 215 bits (526), Expect = 2e-56
Identities = 117/226 (51%), Positives = 151/226 (66%), Gaps = 3/226 (1%)
Frame = +2
Query: 47 RRDGKEED---SNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQ 217
RRD K+E+ SN FQNLDK +LQEAR FN TP++ RKCIHILTKI
Sbjct: 5 RRDKKDEEEGLSNPFQNLDKGQVLQEARVFNETPINVRKCIHILTKI------------- 51
Query: 218 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAA 397
L+ ++LRR+VYL IKEL+ +A+DVIIVTSSLTKDMTGK+D +R +A
Sbjct: 52 -----------LYLINQLMLRRMVYLAIKELANIAEDVIIVTSSLTKDMTGKEDMFRASA 100
Query: 398 IRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLVRRWINEAQEA 577
IRALC ITD+TMLQ IERY+KQA+VDKNP D+V+RW+NEAQEA
Sbjct: 101 IRALCRITDNTMLQGIERYLKQAVVDKNPSVSSAALVSSLHLLKPNFDVVKRWVNEAQEA 160
Query: 578 MTSDHVMVSYHALAVVAGARRNDRLSTVKLITKLARTPVRSPYTLC 715
++SD+ MV YHAL ++ +++DRL+ KLI K ++ +RSPY +C
Sbjct: 161 VSSDNTMVQYHALGLLYHIKQSDRLAVSKLIAKHSKHSLRSPYAVC 206
>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Frame = +2
Query: 62 EEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGE-ELTTQEATD-IF 235
E + Q+LD R+F++ KC+ L + LL + + ++ EA+ I
Sbjct: 1229 EYKTEAMQSLDMILKYLTLRFFDTNTTVLIKCLEFLVALFTLLAESDYQMLEHEASSFIP 1288
Query: 236 FATTKLFQSKDVVLR--RLVYLCIKELSPMAQ 325
+ TK+ KDVV + R ++ I ++ P ++
Sbjct: 1289 YLVTKVGDPKDVVRKMIRSLFKLITKVYPASK 1320
>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
Length = 723
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/100 (23%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Frame = +2
Query: 167 LTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSP-------MAQ 325
L K++ ++ GE+ T T I F L +D +++L+ L E+ P +
Sbjct: 233 LKKVIQMILNGEKFPTLLMTVIKF----LMPLQDHTIKKLL-LIFWEIVPKTGADGKLLH 287
Query: 326 DVIIVTSSLTKDMTGKDDEYRPAAIRALCSITDSTMLQAI 445
++I+V + KD+ ++ R + +R LC + ++ +L+ +
Sbjct: 288 EMILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 327
>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
Length = 604
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 427 TVCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHILCHRTQLFN 299
TVCD N R +++ + + HN H HR FN
Sbjct: 48 TVCDRHGQLNVSRVLIVFMVKKIATGFHQHNGHTSFHRCHAFN 90
>SB_7325| Best HMM Match : SNF2_N (HMM E-Value=8.9e-32)
Length = 884
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 198 PWFSK*SIFVKIWM-HFLGCTGVELKYLA-SCKRVVLSRFWKTLLSSSFPSRRAFIMLCS 25
PW S + V +W F T V +K +A C + SRF SS R AF++ C
Sbjct: 23 PWRSS-KVLVVVWKPKFAAPTIVFVKEMAFRCSKFFASRFSHIRKSSKDIKRSAFLLPCL 81
Query: 24 FNILL*FR 1
+ + +R
Sbjct: 82 LQVFVNYR 89
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2
Query: 629 QQQQPRHGKKPSHDLKSWPPVLHLSSDALNPVRWLTDAKR 510
Q +PRH +P+HD + H +D + R D R
Sbjct: 60 QPDRPRHAARPTHDTQPDQHTTHSQTDTRHAARPTNDTAR 99
>SB_27592| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-39)
Length = 340
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 617 PRHGKKPSHDLKSWPPVLHLSSDALNPV 534
P+ GK ++L + +LH S+ A+NP+
Sbjct: 261 PKRGKGVPYELVQFTKLLHYSNSAINPI 288
>SB_11945| Best HMM Match : EURL (HMM E-Value=9.7)
Length = 323
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 11 NKILKEQSIMKARRDGKEEDSNVFQNLDKTTLLQEARYF--NSTPVHPRKCIH-ILTKIL 181
NK+LK+ + KA+ K +F L ++ QEAR + P P++ L+ ++
Sbjct: 230 NKLLKKNTFNKAKDRIKSRKEEIFGILSDSSKDQEARQVIEDILPASPKEGKRSFLSSVV 289
Query: 182 YLLNQGEE 205
NQ EE
Sbjct: 290 KSFNQSEE 297
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,094,020
Number of Sequences: 59808
Number of extensions: 493162
Number of successful extensions: 1230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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