Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0488
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga...   233   9e-62
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9...    36   0.035
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote...    33   0.14 
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    31   1.0  
At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm...    29   3.1  
At5g42340.1 68418.m05155 armadillo/beta-catenin repeat family pr...    28   7.1  
At3g09220.1 68416.m01096 laccase family protein / diphenol oxida...    27   9.4  

>At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative
           similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2
           coat protein) (Gamma-2 COP) {Homo sapiens}; contains
           Pfam profile: PF01602 Adaptin N terminal region
          Length = 886

 Score =  233 bits (570), Expect = 9e-62
 Identities = 118/230 (51%), Positives = 149/230 (64%), Gaps = 1/230 (0%)
 Frame = +2

Query: 29  QSIMKARRDGKEE-DSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEE 205
           Q ++K   D  +E + + F  ++K  +LQEAR FN   V PR+C  ++TK+LYLLNQGE 
Sbjct: 3   QPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQGES 62

Query: 206 LTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEY 385
            T  EAT++FF+ TKLFQSKD  LRR+VYL IKELSP + +VIIVTSSL KDM  K D Y
Sbjct: 63  FTKVEATEVFFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKIDMY 122

Query: 386 RPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLVRRWINE 565
           R  AIR LC I D T+L  IERY+KQAIVDKNP                 P++V+RW NE
Sbjct: 123 RANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVSSAALVSGLHLLKTNPEIVKRWSNE 182

Query: 566 AQEAMTSDHVMVSYHALAVVAGARRNDRLSTVKLITKLARTPVRSPYTLC 715
            QE + S   +V +HALA++   R+NDRL+  KL+  L R  VRSP   C
Sbjct: 183 VQEGIQSRSALVQFHALALLHQIRQNDRLAVSKLVGSLTRGSVRSPLAQC 232


>At5g11490.1 68418.m01341 adaptin family protein similar to
           SP|Q9WV76 Adapter-related protein complex 4 beta 1
           subunit (Beta subunit of AP- 4) {Mus musculus},
           beta-adaptin Drosophila 1 {Drosophila melanogaster}
           GI:434902; contains Pfam profile: PF01602 Adaptin N
           terminal region
          Length = 841

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +2

Query: 218 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSS-LTKDMTGKDDEYRPA 394
           + + +F        + D+VL+++ YL +   +    D+ ++T + L +D   +D   R  
Sbjct: 60  DVSSVFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLSLLTINFLQRDCKDEDPMIRGL 119

Query: 395 AIRALCSITDSTMLQAIERYMKQAIVDKN 481
           A+R+LCS+    +++ +   +   + D N
Sbjct: 120 ALRSLCSLRVPNLVEYLVGPLGSGLKDNN 148


>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           [Petunia integrifolia]
          Length = 679

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -1

Query: 252 SFVVAKNISVASCVVNSSPWFSK*SIFVKIW---MHFLGCTG-VELKYLASCKRVVLSRF 85
           SF+ + + S++ C  NS  WF    +   +W   +  +G TG ++L+ LA+ K +    F
Sbjct: 67  SFISSWDPSISPCKRNSENWFGVLCVTGNVWGLQLEGMGLTGKLDLEPLAAIKNLRTLSF 126

Query: 84  WKTLLSSSFPSRRAF 40
                + S PS + F
Sbjct: 127 MNNKFNGSMPSVKNF 141


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
 Frame = +2

Query: 29  QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 208
           +SI +AR    EED  V   +D   +L+  R      +  RK    + +++Y+     E+
Sbjct: 30  KSIGEARSKA-EEDRIVLSEVD---ILK--RRLLEPDIPKRKMKEYIIRLVYI-----EM 78

Query: 209 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVII-VTSSLTKDMTGKDDEY 385
              +A+  +    K+    +++L+R  YL +        D+II + +++ KD+   +   
Sbjct: 79  LGHDASFGYIYAVKMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLRSDNYLV 138

Query: 386 RPAAIRALCSITDSTMLQAI 445
             AA+ A+C + +   + A+
Sbjct: 139 VCAALNAICRLINEETIPAV 158


>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
           gamma-adaptin GI:2765190 from [Homo sapiens]; contains
           Pfam profiles PF01602: Adaptin N terminal region,
           PF02883: Adaptin C-terminal domain
          Length = 867

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
 Frame = +2

Query: 158 IHI-LTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD-- 328
           +HI L K+L +L QG+   +    DI        +S       ++Y C++ +  + ++  
Sbjct: 249 LHIRLLKLLRVLGQGDADASDCMNDILAQVASKTESNKNAGNAILYECVQTIMSIEENGG 308

Query: 329 -VIIVTSSLTKDMTGKDDEYRPAAIRALC-SITDSTMLQAIERY 454
             ++  + L K ++ +D+  R  A+  L  S+T  +  QA++R+
Sbjct: 309 LRVLAINILGKFLSNRDNNIRYVALNMLMRSLTVDS--QAVQRH 350


>At5g42340.1 68418.m05155 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein low similarity
           to immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200, GI:14582198;
           contains Pfam profiles PF04564: U-box domain, PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 656

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
 Frame = +2

Query: 26  EQSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCI------HILTK--IL 181
           +  ++ ++ D +  DS + + L K   LQ      +  +  +  I      +I TK  I+
Sbjct: 192 DMMVVFSKTDPRNADSAIIERLAKKLELQTIDDLKTETIAIQSLIQDKGGLNIETKQHII 251

Query: 182 YLLNQGEELTTQEATDIFF--ATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVT 343
            LLN+ ++L   EATDI +     K       ++    +LC   L  M   VII T
Sbjct: 252 ELLNKFKKLQGLEATDILYQPVINKAITKSTSLILPHEFLCPITLEIMLDPVIIAT 307


>At3g09220.1 68416.m01096 laccase family protein / diphenol oxidase
           family protein similar to laccase [Pinus
           taeda][GI:13661201], laccase GB:CAA74105 [Populus
           balsamifera subsp. trichocarpa]; contains Pfam profile:
           Multicopper oxidases
          Length = 567

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 372 LPVMSFVSEEVTMITSCAIGLNSLMHR*TKRRNTTSFD*NSFVVAKNISVASCV 211
           +PV  +V EE  M+ +  +GL +     T  + + S   +SFV+ K +S+   V
Sbjct: 350 VPVPRYVDEE--MLVTIGLGLEACADNTTCPKFSASMSNHSFVLPKKLSILEAV 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,745,139
Number of Sequences: 28952
Number of extensions: 328119
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)