Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0487
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   255   3e-69
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   135   3e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   134   1e-32
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   130   1e-31
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        27   1.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   1.3  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    27   1.7  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   2.3  
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    26   3.0  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    26   3.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.0  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   5.3  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   5.3  
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    25   7.0  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   7.0  
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    25   7.0  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.0  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  255 bits (624), Expect = 3e-69
 Identities = 112/167 (67%), Positives = 132/167 (79%)
 Frame = +3

Query: 30  MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 209
           MREIVH+QAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 210 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 389
           PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120

Query: 390 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTY 530
           R+E+E+CD LQGFQ                   KIREEYPDR+M T+
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATF 167


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  135 bits (327), Expect = 3e-33
 Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
 Frame = +3

Query: 30  MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 203
           MREI+ +  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 204 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 383
           YVPR+I VDLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G ELVD V D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 384 VVRKESESCDCLQGF 428
            +R+ +++C  LQGF
Sbjct: 121 KIRRIADNCSGLQGF 135


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  134 bits (323), Expect = 1e-32
 Identities = 58/168 (34%), Positives = 101/168 (60%), Gaps = 2/168 (1%)
 Frame = +3

Query: 33  REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 212
           REI+ LQAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 213 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 386
           RAIL+DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + ++D+
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121

Query: 387 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTY 530
           + +E++  D L+GF                    ++ + YP +I+ TY
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTY 169


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  130 bits (315), Expect = 1e-31
 Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 6/139 (4%)
 Frame = +3

Query: 30  MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 191
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 192 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 371
             GK+VPR+I VDLEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E++D
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 372 SVLDVVRKESESCDCLQGF 428
           SVL+ +R+ +++C  LQGF
Sbjct: 121 SVLERIRRMADNCSGLQGF 139


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 333 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 422
           A+GH   G ELV +  D +RK+SE+   L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 157 SWSASMYTTMKPPAASTCPAPFSSTWSPAPWTLSA 261
           S +AS      PP A+   +  SST SPAPW   A
Sbjct: 396 SGAASPQAGHPPPWAAASTSVSSSTSSPAPWAKPA 430


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 69  NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 170
           N++G    E+++++  +DPT A   + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 264 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 365
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 406 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 501
           LA+ Y    + + +V APG +W+P+  +R  K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 13  KITYTK*GKSFIYRPANVV 69
           +I+YT  G SFIYRP N++
Sbjct: 64  EISYT--GTSFIYRPGNII 80


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 17/65 (26%), Positives = 21/65 (32%)
 Frame = -1

Query: 228 RREWRGARTCRRRLHCSIH*CAPTASQSPHGRHRWGRCRARQR*SPRT*LQSGYHIGRPV 49
           R   R    C + L C  H C               +   ++R       QS  H G P 
Sbjct: 693 RENVRCGELCNKLLSCKTHFCEKLCHPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPC 752

Query: 48  DERFP 34
           DER P
Sbjct: 753 DERIP 757


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +1

Query: 127 PVPTMGTLT----CSWSASMYTTMKPPAASTCPAPFSSTWSPAP 246
           P+PT          + S S  T   P +A+T P P S+T  P P
Sbjct: 544 PIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATTKPTP 587


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +3

Query: 285  RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 416
            RP   +F     G++   G   +  E  D ++ +  +  ESCDC
Sbjct: 955  RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 322 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 227
           P+   PK  L  R I P GPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -2

Query: 350 CVVSLGPV-VAGAGLS--EDEVVRTEDLSER--SGADRVHGAGLQVDENGAGHV 204
           C V  G + V GA LS  + E++R +       +GAD+  G  ++V  +G GHV
Sbjct: 19  CKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHV 72


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 424 ASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES 519
           A+N+H+ SVAA      PS+    V +T T S
Sbjct: 172 AANVHVLSVAASPNPSTPSNGPAPVSTTATPS 203


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = -2

Query: 350 CVVSLGPV-VAGAGLS--EDEVVRTEDLSER--SGADRVHGAGLQVDENGAGHV 204
           C V  G + V GA LS  + E++R +       +GAD+  G  ++V  +G GHV
Sbjct: 19  CKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHV 72


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 427 SNLHIPSVAAPGPVWAPSSSQRSVKSTPTE 516
           S +H  S A PGP+  PS+      ST  E
Sbjct: 241 SPMHTYSSAVPGPISVPSAPYGRASSTIAE 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,474
Number of Sequences: 5004
Number of extensions: 44552
Number of successful extensions: 156
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)