Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0486
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    26   5.1  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.1  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   8.9  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.9  
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...    25   8.9  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    25   8.9  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -1

Query: 111 PLKLSLAEETAVTLPPVSVTWNTMF 37
           PLKL   E  AV L   SVTW   F
Sbjct: 188 PLKLKYVESLAVALRTESVTWVRYF 212


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 157 FYEARRTGST--CELPIKNCFILLKK 228
           +Y++   G+T  C L IKN  ILLKK
Sbjct: 186 YYDSMSNGNTNDCNLAIKNLGILLKK 211


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 330 TDERFSSLRHPERY*RAAEAAVDHRTGNQPTN 235
           TDE  +SL HPER      A+  H+  N P N
Sbjct: 466 TDED-ASLSHPERTILFKAASTRHQANNDPNN 496


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 154 SFYEARRTGSTCELPIKNCFILLK 225
           +FYEA + G     PIKNC  +L+
Sbjct: 618 AFYEALKKGFLIGHPIKNCRFVLE 641


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 48  STSQIPVVASPPSLLQDLASVDRLFITKR 134
           S S  P V  PP + Q+L++V+  F TK+
Sbjct: 265 SVSSTPPVHPPPPVPQNLSAVNEEFDTKK 293


>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 62  TGGSVTAVSSARLSFSGQTLHHKTSPGEKRALS 160
           +GGSV   + A L F+G+  HH+      + +S
Sbjct: 198 SGGSVVMNTDADLYFTGELSHHQVLAAMAKGIS 230


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 413 DCADQLSWWREDLE 372
           DCA QLS+W ED +
Sbjct: 81  DCARQLSYWGEDCD 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,704
Number of Sequences: 5004
Number of extensions: 60974
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)