Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0486
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 33 0.25
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904... 30 1.7
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 30 1.7
02_02_0207 - 7845072-7845102,7845235-7845341,7845444-7845521,784... 30 1.7
04_04_1034 + 30275708-30276022,30276354-30276440,30276833-302768... 30 2.3
03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238... 30 2.3
02_02_0121 + 7005356-7005418,7007533-7007632,7007713-7007810,700... 29 4.0
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 29 5.3
02_02_0640 - 12528075-12528363,12531326-12532311 29 5.3
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628... 28 7.0
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986 28 9.3
03_02_1038 - 13579407-13579466,13579630-13579739,13579819-135799... 28 9.3
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 28 9.3
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 9.3
>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
Length = 288
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 517 DVELNVLEAARIQNTTSRSLFRITYRGLTAVHCCSTVPTSCPGGEKTW 374
D E + R++ SR+ F +YRGL A C S T+C W
Sbjct: 197 DAEEWATQGGRVRTDWSRAPFTASYRGLAASGCTSQDATACANPGSPW 244
>06_03_0479 -
21289903-21290124,21290207-21290342,21290435-21290490,
21290734-21290811,21290902-21290988,21291067-21291127,
21291220-21291308,21291448-21291545,21291655-21291754,
21293968-21294030
Length = 329
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 59 DTGGSVTAVSSARLSFSGQTLHHKTSPG 142
D+GGSV +V R+SF G+ H +T+ G
Sbjct: 3 DSGGSVVSVDVERISFGGKEHHIQTNHG 30
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 96 DLASVDRLFITKRLRVKNVLFLRGKKNRFYVRTPDQKLL 212
DL S DRLF T R+++V+ G NRF++ + LL
Sbjct: 311 DLYSDDRLFATVDPRLRSVILPSGYLNRFFIHLLRKALL 349
>02_02_0207 -
7845072-7845102,7845235-7845341,7845444-7845521,
7845966-7846169,7846389-7846445,7846513-7846578,
7847976-7848020,7848129-7848170,7848563-7848649,
7848830-7848919,7849226-7849431,7849565-7849604
Length = 350
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +3
Query: 90 LQDLASVDRLFITKRLRVKNVLFLRGKKNRFYVRTP--DQKLLYSIEEINSWWVGYLFYG 263
L+ L S L I + + N++ +++R+ + P Q + I E ++ LF
Sbjct: 115 LKPLLSRANLLIARDIEWANIMLAFEQESRYIIMDPLFPQSPVGFIREKSNVIFRQLFRS 174
Query: 264 LRPLQLRVNNAQGVEVMRIVRPY 332
RP + +A G E+ + RP+
Sbjct: 175 RRPFVAEITDAMGNEIFTVRRPF 197
>04_04_1034 +
30275708-30276022,30276354-30276440,30276833-30276874,
30276983-30277027,30278826-30278891,30278956-30279012,
30279286-30279435,30279849-30279926,30280053-30280159,
30280261-30280291
Length = 325
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +3
Query: 90 LQDLASVDRLFITKRLRVKNVLFLRGKKNRFYVRTP--DQKLLYSIEEINSWWVGYLFYG 263
L+ L S L I + + N++ +++R+ + P Q + I E ++ LF
Sbjct: 108 LKPLLSRANLLIARDIEWANIVLAFEQESRYIIMDPLFPQSPVGFIREKSNVIFRQLFRS 167
Query: 264 LRPLQLRVNNAQGVEVMRIVRPY 332
RP + +A G E+ + RP+
Sbjct: 168 RRPFVAEITDAMGNEIFTVRRPF 190
>03_05_1079 +
30222017-30222903,30222992-30223117,30223752-30223808,
30224883-30224913,30225159-30225236,30225297-30225383
Length = 421
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 544 RHLQTLAGSHARIVPCTGY*QIRRGLRKESDAGRKSVTTRCHFA 675
R Q ++GS P G Q RR +E +GR + +RCH A
Sbjct: 250 RPFQLVSGSQTSSTPELGLMQRRRCTGREDGSGRCTTGSRCHCA 293
>02_02_0121 +
7005356-7005418,7007533-7007632,7007713-7007810,
7007933-7008021,7008111-7008171,7008253-7008339,
7008409-7008486,7008583-7008639,7008731-7008786,
7008877-7009012,7009103-7009324
Length = 348
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 59 DTGGSVTAVSSARLSFSGQTLHHKTSPG 142
D+GGSV ++ R+SF G+ H T+ G
Sbjct: 3 DSGGSVVSIDVERISFGGKEHHIHTNHG 30
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 485 YP--KHHIAFLIPDHVQRFDRSPLLFDCADQLSWWREDLEPL 366
YP K +I + PDH RFD FD D W ED+ PL
Sbjct: 264 YPEWKLYIQTIDPDHEDRFD-----FDPLDVTKTWPEDIIPL 300
>02_02_0640 - 12528075-12528363,12531326-12532311
Length = 424
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 482 PKHHIAFLIPDHVQRFDRSPLLFDCADQLSWWREDLEPL*LAGQHPGRA 336
P+ H+ L P SP+L D A +WW L P+ + QH G A
Sbjct: 78 PRRHLLCLFPTDPSL--ASPILLDPAAPTAWW--SLPPIPCSPQHYGLA 122
>03_05_0783 -
27662178-27662237,27662659-27662700,27662791-27662892,
27662991-27663147,27663230-27663307,27663391-27663446,
27663557-27663634,27663736-27663867,27663943-27664078,
27664252-27664403,27665317-27665391,27665476-27665535,
27665865-27665944,27666392-27666462,27666549-27666689,
27667467-27667555,27668657-27668731,27669303-27669401,
27669526-27669572,27669654-27669875,27671485-27671557,
27671650-27671823
Length = 732
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 189 RTPDQKLLYSIEEINSWWVGYLFY 260
R P +L+++EE+ SWW +L +
Sbjct: 244 RAPVGGVLFALEEVTSWWRSHLMW 267
>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
Length = 700
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/39 (46%), Positives = 23/39 (58%)
Frame = +2
Query: 83 VSSARLSFSGQTLHHKTSPGEKRALSTRQEEQVLRANSR 199
+SS R S S T KT P E AL T +EE +L A+S+
Sbjct: 162 ISSIRSSIS--TRKFKTDPYELLALGTSEEELLLGAHSQ 198
>03_02_1038 -
13579407-13579466,13579630-13579739,13579819-13579916,
13579991-13580077,13580412-13580517,13580946-13581030,
13581139-13581192,13581274-13581423,13581561-13581572
Length = 253
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = -3
Query: 505 NVLEAARIQNTTSRSLFRITYRGLTAVHCCSTVPTSCPG----GEKTWSRCSWQGSTLAV 338
+V +A + + L + G+T V C+T T+ P G+ T R W G+ V
Sbjct: 51 SVFQAYKADTRNAAELDPEIFEGVTHV-ICTTGTTAFPSKRWDGDNTPERVDWDGTRNLV 109
Query: 337 QAYGRTI 317
A RTI
Sbjct: 110 SAMPRTI 116
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -2
Query: 488 PYPKHHIAFLIPDHVQRFDRSPLLFDCADQLSWWREDLEPL 366
P K I + PDH RFD FD D W ED+ PL
Sbjct: 265 PEWKLFIQTIDPDHEDRFD-----FDPLDVTKTWPEDIVPL 300
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 496 EAARIQNTTSRSLFRI--TYRGLTAVHCCSTVPTS 398
E+A I + TSR+L + T RGL A+HC ++ S
Sbjct: 1443 ESAEIIDVTSRTLRGVLSTARGLNALHCLDSLDRS 1477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,916,236
Number of Sequences: 37544
Number of extensions: 436116
Number of successful extensions: 1178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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