Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0486
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)                  55   5e-08
SB_20112| Best HMM Match : EGF (HMM E-Value=0)                         33   0.19 
SB_3388| Best HMM Match : Involucrin (HMM E-Value=4.9)                 30   2.3  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   30   2.3  
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)                     29   3.1  
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)                  29   4.1  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   5.4  
SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)                 29   5.4  
SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)                29   5.4  
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 29   5.4  
SB_7463| Best HMM Match : Ank (HMM E-Value=0)                          29   5.4  
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)           28   7.2  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012)              28   9.5  

>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
          Length = 554

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 24/73 (32%), Positives = 40/73 (54%)
 Frame = +3

Query: 267 RPLQLRVNNAQGVEVMRIVRPYACTARVLPCQLQRLQVFSPPGQLVGTVEQQWTAVKPLY 446
           RP  +++ +    EV+ + RP  C++   PC LQ ++V SPPG +VG   Q W+   P Y
Sbjct: 336 RPFDIKIMDNTQREVIHLTRPLRCSSCWFPCCLQEVEVQSPPGTVVGYCCQSWSICIPKY 395

Query: 447 VIRNKERDVVFWI 485
            +++  R  +  I
Sbjct: 396 TLQDANRQTILQI 408


>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2112

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 163 EARRTGSTCELPIKNCFILLKK*TVGGLVTCSMVYGRFSCALIT 294
           E+   G+ CE+ +  C  L +    GG  TCS VYG + C  IT
Sbjct: 129 ESLPAGARCEIDVDECTTLSQPCQNGG--TCSNVYGGYMCRCIT 170


>SB_3388| Best HMM Match : Involucrin (HMM E-Value=4.9)
          Length = 174

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 631 IPFEGHAESVSNRCKEQCVRDSLPTFAGAADRRAVRPEDVELNVLEAARIQ 479
           +P E H ++   +CK Q + +S  T+     ++  + +  + NV +   IQ
Sbjct: 50  VPLEEHTDNEGRKCKRQKICESQKTYNEKMKKQTQKAKKFKFNVYDIVAIQ 100


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 631 IPFEGHAESVSNRCKEQCVRDSLPTFAGAADRRAVRPEDVELNVLEAARIQ 479
           +P E H ++   +CK Q + +S  T+     ++  + +  + NV +   IQ
Sbjct: 548 VPLEEHTDNEGRKCKRQKICESQKTYNEKMKKQTQKAKKFKFNVYDIVAIQ 598


>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
          Length = 622

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 631 IPFEGHAESVSNRCKEQCVRDSLPTFAGAADRRAVRPEDVELNVLEAARIQ 479
           +P E H ++   +CK Q + +S  T+     ++  + +  + NV +   IQ
Sbjct: 498 VPLEEHIDNEGRKCKRQKICESQKTYNEKMKKQTQKAKKFKFNVYDIVAIQ 548


>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
          Length = 584

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 316 ESFVRTPARPGCCPASYNGSRSSRHQDS 399
           E FVRT ARPGC   S   SR   H+D+
Sbjct: 548 EGFVRTWARPGCTVLS--NSRVMEHEDT 573


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 115 LSTEAKSCRRDGGDATTGICDVEYY 41
           L  E K C   G  A TG CD  YY
Sbjct: 66  LCDEGKYCNTTGQTAVTGTCDAGYY 90


>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
          Length = 382

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 74  VTAVSSARLSFSGQTLHHKTSPGEKRALSTRQEEQVLRANSRSKTALFY*RNKQLVG 244
           +  V+S   S S  +LH KT   E +   T+  +  L  N  +   LFY +N  +VG
Sbjct: 10  IAGVASG-FSASENSLHLKTETREGQGNRTKMGDHHLYGNYDNMEVLFYEQNSHMVG 65


>SB_42269| Best HMM Match : efhand (HMM E-Value=4.8e-05)
          Length = 901

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 45  YSTSQIPVVASPPSLLQDLASVDRLFITKRLRVKNVLFLRG 167
           + T+   +  +PPS L D        +TKR+RV NVL+L G
Sbjct: 496 FGTTTNTLFINPPSDLLDRVCA---LLTKRIRVLNVLYLHG 533


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -3

Query: 631  IPFEGHAESVSNRCKEQCVRDSLPTFAGAADRRAVRPEDVELNVLEAARIQ 479
            +P E H ++   +CK Q + +S  T+     ++  + +  + NV +   IQ
Sbjct: 1922 VPLEEHIDNEGRKCKRQKICESQKTYNEKMKKQTQKAKIFKFNVYDIVAIQ 1972


>SB_7463| Best HMM Match : Ank (HMM E-Value=0)
          Length = 864

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 463 SLFRITYRGLTAVHCCSTVPTSCPGGEKTWSRCSWQGSTLAVQAYGRTILITST 302
           S+ ++   G T +HC      SC  G +   RC W+ +T+ +     +I  T+T
Sbjct: 720 SIHQVNKEGRTPLHCAVAAKCSCTHGCR---RCVWKYNTVELLVEEASITDTTT 770


>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
          Length = 1071

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 148 TCSFYEARRTGSTCELPI 201
           TC  Y+   TGSTCE+P+
Sbjct: 399 TCDCYKTFYTGSTCEMPL 416


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = -3

Query: 523  PEDVELNVLEAARIQNTTSRSLFRITYRGLTAVHCCSTVPTSCPGGEKTWSRCSWQGSTL 344
            PE + +  ++   +Q    R         + AVH  S    SCP G   WS   WQG + 
Sbjct: 1655 PEPIPMMPVQETNVQPYIGRCAVCEVSSHVMAVHSQSITVPSCPSG---WSPL-WQGYSF 1710

Query: 343  AVQAYGR 323
             +   GR
Sbjct: 1711 LMPYIGR 1717


>SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012)
          Length = 247

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = -3

Query: 631 IPFEGHAESVSNRCKEQCVRDSLPTFAGAADRRAVRPEDVELNVLEAARIQ 479
           +P E H ++   +CK + + +S  T+     ++  + +  + NV +   IQ
Sbjct: 123 VPLEEHIDNEGRKCKRKKICESQKTYNEKMKKQTQKAKKFKFNVYDIVAIQ 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,231,757
Number of Sequences: 59808
Number of extensions: 509563
Number of successful extensions: 1203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)