Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0486
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   8.3  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   8.3  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    28   8.3  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical
           protein W09D12.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 84  SLLQDLASVDRLFITKRLRVKNVLFLRGKK--NRFYVRTPDQKLLYSIEEINSWWV 245
           SL   L +V  LF+    R  +V  +  +K  NR+Y   P   LLYS   I+ WW+
Sbjct: 90  SLYFHLQNVTGLFLVI-YRFTSVYSINSEKVWNRWYFLVPVLGLLYSFIIISPWWL 144


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +1

Query: 334  PARPGCCPASY-NGSRSSRHQDSWSAQSNSNGLRSNLCT*SGIRNAMWCFGYG----LLQ 498
            P    CC A + + +   +H    ++  +SNG  ++ C   G  + MW          LQ
Sbjct: 2030 PFEASCCDARFASKALCVKHDQEHASFLDSNGTDASCCPICGSLS-MWSLPKDPHTDCLQ 2088

Query: 499  GH*VRHLQA*RLSCRRHLQ 555
             H +RH    R SCR+ L+
Sbjct: 2089 SHIIRHGLDYRSSCRQCLK 2107


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +1

Query: 334  PARPGCCPASY-NGSRSSRHQDSWSAQSNSNGLRSNLCT*SGIRNAMWCFGYG----LLQ 498
            P    CC A + + +   +H    ++  +SNG  ++ C   G  + MW          LQ
Sbjct: 2030 PFEASCCDARFASKALCVKHDQEHASFLDSNGTDASCCPICGSLS-MWSLPKDPHTDCLQ 2088

Query: 499  GH*VRHLQA*RLSCRRHLQ 555
             H +RH    R SCR+ L+
Sbjct: 2089 SHIIRHGLDYRSSCRQCLK 2107


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 101 SFSGQTLHHKTSPGEKRALSTRQEEQVLRANSRS 202
           SFSG  LH++ +  E++  S++ E +V  + +RS
Sbjct: 23  SFSGAKLHYQYTGKEQKTSSSKDESRVHHSENRS 56


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 101 SFSGQTLHHKTSPGEKRALSTRQEEQVLRANSRS 202
           SFSG  LH++ +  E++  S++ E +V  + +RS
Sbjct: 23  SFSGAKLHYQYTGKEQKTSSSKDESRVHHSENRS 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,569,526
Number of Sequences: 27780
Number of extensions: 367320
Number of successful extensions: 1090
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)