Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0486
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    24   1.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   4.1  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 424 GLRSNLCT*SGIRNAMWCF 480
           GL +N+CT   + N  W F
Sbjct: 23  GLHNNMCTSLNLSNLFWLF 41


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 237 WWVGYLFYGLRPLQLRVNNAQGV 305
           WW   +FY + P     +N+ G+
Sbjct: 24  WWKNAIFYQVYPRSFMDSNSDGI 46


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -3

Query: 598 NRCKEQCVRDSLPTFAGAADRRAVRPEDVELNVLEAARIQNTTSRSLFRITYRGL 434
           N+C  + VRD++ + AG      + P  +E   +++ +I  +      R  Y+ +
Sbjct: 41  NQCIAEAVRDAVVSLAGGLKSFKILP--IEPLAVDSVKIGESQGSVTLRQEYKNI 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,803
Number of Sequences: 438
Number of extensions: 4408
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)