Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0486
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09130.1 68416.m01074 hypothetical protein                          29   3.4  
At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to ...    29   3.4  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    29   4.4  
At3g51700.1 68416.m05669 expressed protein                             28   5.9  
At1g04240.1 68414.m00415 auxin-responsive protein / indoleacetic...    28   7.7  

>At3g09130.1 68416.m01074 hypothetical protein
          Length = 397

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 416 FDCADQLSWWREDLEPL 366
           F   DQLSWW+ED E L
Sbjct: 195 FSRCDQLSWWKEDEEAL 211


>At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to
           regulatory protein NPR1 (nonexpresser of PR genes 1,
           NPR1; noninducible immunity 1, Nim1; salicylic acid
           insensitive 1, Sai1) [Arabidopsis thaliana]
           SWISS-PROT:P93002
          Length = 593

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -3

Query: 589 KEQCVRDSLPTFAGAADRRAVRPEDVELNVLEAARIQNTTSRSLFRIT-YRGLTAVHCCS 413
           +EQ  RD  P+FA AAD   +   D+E  V  A R+  T +++   I   +G       S
Sbjct: 404 REQIPRDVPPSFAVAADELKMTLLDLENRVALAQRLFPTEAQAAMEIAEMKGTCEFIVTS 463

Query: 412 TVPTSCPGGEKT 377
             P    G ++T
Sbjct: 464 LEPDRLTGTKRT 475


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 213 KAVFDREFARRTCSSCLVERARFSP 139
           KA   +E  R+T  SCLV  ARF+P
Sbjct: 756 KATGKQESMRQTAGSCLVRLARFNP 780


>At3g51700.1 68416.m05669 expressed protein
          Length = 344

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +3

Query: 192 TPDQKLLYSIEEINSWWVGYLFYGLRPLQLRVNNAQGVEVMRIVRPYACTARVLPCQLQR 371
           +P+ K+LY +E +NS  +     G    +LR+     V ++R + PY    +    Q+ R
Sbjct: 161 SPNDKMLYPLEFLNSIKIP----GFPDFKLRLKVGAPVMLLRDLAPYGWLRKGTRLQITR 216

Query: 372 LQVF 383
           ++ F
Sbjct: 217 VETF 220


>At1g04240.1 68414.m00415 auxin-responsive protein / indoleacetic
           acid-induced protein 3 (IAA3) identical to SP|Q38822
           Auxin-responsive protein IAA3 (Indoleacetic acid-induced
           protein 3) {Arabidopsis thaliana}; EST gb|T04296 comes
           from this gene
          Length = 189

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 146 KRALSTRQEEQVLRANSRSKTALFY*RNKQLVGWLPV 256
           KR LST  E+++   +S  KT     R  Q+VGW PV
Sbjct: 37  KRVLSTDTEKEI--ESSSRKTETSPPRKAQIVGWPPV 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,952
Number of Sequences: 28952
Number of extensions: 339279
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)