Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0485
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    31   0.17 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.89 
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   2.7  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    25   8.3  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +1

Query: 73  KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*I 252
           K +D  ++ +E   T       + +    T +DSR R+        + RKR H       
Sbjct: 144 KLKDRTEASKEESKTVTDHSNRRESRRESTYYDSRERNGKRTSRSTLDRKRFHDA----- 198

Query: 253 QETEKRRFGRRIQHHS 300
            +TE+ R+GR    HS
Sbjct: 199 SDTERNRYGRSPSPHS 214


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 716 SSRSRVLARLTNSNSFLYI*IDRFLQFYAKCILL 615
           SS+S     LT S S L   +DR +QFY K I L
Sbjct: 194 SSKSSTFYSLTESKSGLVNSVDRCIQFYEKSISL 227


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -1

Query: 723 KSVQPFSSFSETNEQQFIFIYIDR*ISSVLR*MYITSNPPSLRFENCNLL*ISQLFNGCY 544
           +S +  ++ ++ N Q F F+ +D     V      ++ PP LRF   N+L  + + +G Y
Sbjct: 276 ESEKKSAALAKDNNQSFRFLELD-----VTEKFLSSAMPPGLRFPAVNILGDNLILSGIY 330

Query: 543 YT 538
            T
Sbjct: 331 LT 332


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 199 DSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHHSIKRERAQR 324
           DS    ++R HR  H    +   R      QH S KRE ++R
Sbjct: 162 DSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSDKREHSRR 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,405
Number of Sequences: 5004
Number of extensions: 61996
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)