Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0485
(723 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32) 32 0.54
SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18) 30 1.7
SB_46195| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.3) 30 2.2
SB_23991| Best HMM Match : fn3 (HMM E-Value=1.3e-10) 30 2.2
SB_58817| Best HMM Match : 7tm_1 (HMM E-Value=7e-21) 29 2.9
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3) 29 3.8
SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28) 29 5.0
SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 6.7
SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
Length = 734
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 94 SRRERLFTGGHRQRNKTAAPPRTQHDSRHRH 186
S RE L+T N+T PRTQ D RHRH
Sbjct: 145 SERESLYTP---HVNRTGNKPRTQRDERHRH 172
>SB_36157| Best HMM Match : 7tm_1 (HMM E-Value=4.8e-18)
Length = 474
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 59 DTCLGKTETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVL 238
D CL K +T+ ++ ND+S TK ++ + L+ A+ GN F++
Sbjct: 2 DGCLNKNDTICNSL-NDTSDLDYDGLTKCE-WEDTARYTQVAALGLITFAILAGNTFVIY 59
Query: 239 IIYKYR-KRKNDDL 277
++++ + RK DL
Sbjct: 60 LVFRNKTMRKTVDL 73
>SB_46195| Best HMM Match : Mpv17_PMP22 (HMM E-Value=3.3)
Length = 354
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +2
Query: 350 HQISLRESQINDNKKKIPSLHSIKQNRFLGPYTPMYA*IFKTTQRILMRFFLIDSVIEEV 529
H+ + S+I+D KK PS +S + + + + +T QRI +R+FL+ S++ V
Sbjct: 283 HKQVSKSSEISDIMKKFPSSYS--RGTYYSACSMCH---LRTVQRISLRWFLVISIVRSV 337
>SB_23991| Best HMM Match : fn3 (HMM E-Value=1.3e-10)
Length = 196
Score = 29.9 bits (64), Expect = 2.2
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Frame = +2
Query: 29 GSKYERLSLSDTCLGK---TETVVKAVGNDSSREGIGKETKLPPHQEPNMIVDIVIPSLL 199
GS YE T G +E+V+ +V S GK+ PP + P ++IV P +
Sbjct: 82 GSSYEVRVAGFTSKGTGPYSESVIFSVDKTS-----GKKRTNPPKKLPMFNIEIVFPLVA 136
Query: 200 IAALFIGNAFIVLIIYKYRKRKND---DLEDEFNTIPLN 307
+ L I + + LI + K N+ +L E + + LN
Sbjct: 137 MMILSITSVMLALICNRRAKEDNNEGCELNQEDSPMELN 175
>SB_58817| Best HMM Match : 7tm_1 (HMM E-Value=7e-21)
Length = 298
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 437 RESDFVLCYVVKVFFFCYRLFAIPVNLFGVLETKL 333
++S +CY++ +F CY + V L G+++ L
Sbjct: 237 KKSTLTMCYILGIFLLCYLPMVVVVLLRGIVQYSL 271
>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/74 (29%), Positives = 28/74 (37%)
Frame = +2
Query: 101 GNDSSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKYRKRKNDDLE 280
GN G G T P VD+ I + + A I+ R DDL
Sbjct: 412 GNTDGDYGRGSCTHTQDQPNPWWRVDLGITQPVSEVFLVNRASGSEILQNAEVRVGDDLT 471
Query: 281 DEFNTIPLNGNVHS 322
D NT PL G++ S
Sbjct: 472 DNGNTNPLCGDMFS 485
>SB_7869| Best HMM Match : DUF947 (HMM E-Value=6.3)
Length = 408
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +1
Query: 34 EIRTSEFERHVSWKNRDGCQSRRERLFTGGHRQ 132
EI + ER +WK R+G SR+ R +GGHR+
Sbjct: 329 EITSLCAERAPAWKKRNG--SRKRRRDSGGHRE 359
>SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28)
Length = 961
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 140 KLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKYRK 259
K+ P Q IV I + ++++ IGN + LI+ K K
Sbjct: 9 KIDPEQPWKRIVKITVYAIIMVVALIGNILVCLIVRKTSK 48
>SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 70 WKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRT 237
WKN D + + H + N+ P HDS+ P+AA S H K H+T
Sbjct: 169 WKNHDSPEHQPPPAEENTHHEYNQR---PWKSHDSQELQPLAAGSKHQHSK--HKT 219
>SB_24090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 110 SSREGIGKETKLPPHQEPNMIVDIVIP 190
S REG ++ +PP E N + D VIP
Sbjct: 264 SEREGEPVDSTIPPSPEANSVADYVIP 290
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +1
Query: 73 KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP--VAADSGPVHRKRVHRTHHL 246
++R+ + R++ + HR + K + R + S+HR DSG H +R HR
Sbjct: 233 RSRERSKDRKKDRDSSKHRDKEKDRSRERDRSGSKHRSKDRTRRDSGDSH-ERQHRPQRS 291
Query: 247 *IQETEKRRFG--RRIQH-HSIKRERAQRGICSLV 342
+ R G R +H H ++ E+ + + ++
Sbjct: 292 GSDASNDSRRGTHRSRKHKHRLESEKKAKNVKKII 326
>SB_28876| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 356
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +2
Query: 110 SSREGIGKETKLPPHQEPNMIVDIVIPSLLIAALFIGNAFIVLIIYKYRKRK 265
S+ G + LP H + V + SL++ +GN +++++ + R+ +
Sbjct: 5 SNATDFGAKCSLPQHSDVIQAVKVTSYSLILVFSALGNILVIVVVLRTRQMR 56
>SB_37672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Frame = +1
Query: 118 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRR--IQ 291
G +R TAA R A G +HR + HH+ Q RR G R Q
Sbjct: 202 GNTHRRQITAATCAAARQPRQHAQEPAIRGNMHRHQTTTPHHM-CQTAAARRAGPRQPRQ 260
Query: 292 HHSIKRERAQRGICSLVSST 351
H R C + ++T
Sbjct: 261 HAQAPDNRGNTRRCQITAAT 280
>SB_57887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 141 FVSLPMPSREESFPTALTTV-SVFPRHVSLKLR 46
++ +P S +S P + + S+F RH SLKLR
Sbjct: 166 YIEVPQLSDSQSSPVTINPLKSIFARHGSLKLR 198
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,249,792
Number of Sequences: 59808
Number of extensions: 442487
Number of successful extensions: 1267
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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